21 homologs were found in PanDaTox collection
for query gene Pnec_R0015 on replicon NC_010531
Organism: Polynucleobacter necessarius subsp. necessarius STIR1



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_010531  Pnec_R0015    100 
 
 		 105 bp  208  2e-52  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.303512  normal  1 
 
 
-
 
NC_009379  Pnuc_R0019  SRP RNA; RNA component of signal recognition particle  99.05 
 
 		 105 bp  200  5e-50  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010551  BamMC406_R0048    86.67 
 
 		 103 bp  83.8  0.000000000000008  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0963367  normal  0.0663879 
 
 
-
 
NC_008390  Bamb_R0048  SRP RNA; RNA component of signal recognition particle  86.67 
 
 		 105 bp  83.8  0.000000000000008  Burkholderia ambifaria AMMD  Bacteria  normal  0.267779  n/a   
 
 
-
 
NC_009080  BMA10247_3560  signal recognition particle RNA  86.75 
 
 		 102 bp  77.8  0.0000000000005  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_010084  Bmul_R0038  SRP RNA; RNA component of signal recognition particle  86.75 
 
 		 103 bp  77.8  0.0000000000005  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0368326  normal  0.266058 
 
 
-
 
NC_007510  Bcep18194_AR0056  SRP RNA; RNA component of signal recognition particle  85.56 
 
 		 103 bp  75.8  0.000000000002  Burkholderia sp. 383  Bacteria  normal  0.0102004  normal  0.775524 
 
 
-
 
NC_010508  Bcenmc03_R0048    85.56 
 
 		 103 bp  75.8  0.000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0344887  normal  0.132073 
 
 
-
 
NC_008062  Bcen_R0102  SRP RNA; RNA component of signal recognition particle  85.56 
 
 		 103 bp  75.8  0.000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0105096  n/a   
 
 
-
 
NC_008542  Bcen2424_R0046  SRP RNA  85.56 
 
 		 103 bp  75.8  0.000000000002  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00820406  n/a   
 
 
-
 
NC_007951  Bxe_AR0037  SRP RNA; RNA component of signal recognition particle  91.07 
 
 		 103 bp  71.9  0.00000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.0480154  normal  0.14227 
 
 
-
 
NC_012856  Rpic12D_R0020  SRP RNA; RNA component of signal recognitionparti cle  85.54 
 
 		 104 bp  69.9  0.0000000001  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.330049 
 
 
-
 
NC_010622  Bphy_R0002    85.54 
 
 		 103 bp  69.9  0.0000000001  Burkholderia phymatum STM815  Bacteria  normal  0.180442  normal  0.539085 
 
 
-
 
NC_007347  Reut_AR0024  SRP RNA; RNA component of signal recognition particle  89.29 
 
 		 105 bp  63.9  0.000000007  Ralstonia eutropha JMP134  Bacteria  normal  0.255506  n/a   
 
 
-
 
NC_007973  Rmet_R0026  SRP RNA; RNA component of signal recognition particle  100 
 
 		 104 bp  60  0.0000001  Cupriavidus metallidurans CH34  Bacteria  normal  0.283025  normal  0.297778 
 
 
-
 
NC_007298  Daro_R0032  SRP RNA, RNA component of signal recognition particle  85.94 
 
 		 101 bp  56  0.000002  Dechloromonas aromatica RCB  Bacteria  normal  0.116447  unclonable  0.0000000450156 
 
 
-
 
NC_007614  Nmul_AR0033  4.5S ribosomal RNA component of signal recognition particle (SRP)  85.96 
 
 		 104 bp  50.1  0.0001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.898057  n/a   
 
 
-
 
NC_010524  Lcho_R0047  SRP RNA; RNA component of signal recognition particle  100 
 
 		 104 bp  48.1  0.0004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20206 
 
 
-
 
NC_007947  Mfla_R0040  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 101 bp  44.1  0.007  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.000585528  hitchhiker  0.00000253455 
 
 
-
 
NC_007794  Saro_R0021  SRP RNA; RNA component of signal recognition particle  93.33 
 
 		 92 bp  44.1  0.007  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.132266  n/a   
 
 
-
 
NC_013517  Sterm_R0011  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 88 bp  44.1  0.007  Sebaldella termitidis ATCC 33386  Bacteria  normal  1  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>