18 homologs were found in PanDaTox collection
for query gene Dret_0071 on replicon NC_013223
Organism: Desulfohalobium retbaense DSM 5692



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_013223  Dret_0071  DctQ (C4-dicarboxylate permease, small subunit)  100 
 
 		 162 aa  328  2e-89  Desulfohalobium retbaense DSM 5692  Bacteria  normal  1  normal  1 
 
 
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NC_013457  VEA_004530  TRAP-type C4-dicarboxylate transport system small permease component  59.46 
 
 		 160 aa  195  2.0000000000000003e-49  Vibrio sp. Ex25  Bacteria  hitchhiker  0.001147  n/a   
 
 
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NC_013522  Taci_1442  TRAP-type C4-dicarboxylate transport system small permease component-like protein  26.92 
 
 		 199 aa  56.6  0.0000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  1  n/a   
 
 
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NC_010725  Mpop_0263  TRAP C4-dicarboxylate transport system permease DctM subunit  32.52 
 
 		 624 aa  52.4  0.000002  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
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NC_008044  TM1040_2068  hypothetical protein  26.45 
 
 		 187 aa  49.7  0.00002  Ruegeria sp. TM1040  Bacteria  normal  0.760531  normal  1 
 
 
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NC_010172  Mext_2094  TRAP C4-dicarboxylate transport system permease DctM subunit  32.52 
 
 		 628 aa  48.9  0.00003  Methylobacterium extorquens PA1  Bacteria  normal  0.386051  normal  0.0954493 
 
 
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NC_011757  Mchl_2369  TRAP C4-dicarboxylate transport system permease DctM subunit  32.52 
 
 		 628 aa  48.5  0.00003  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.193075  normal  0.0167467 
 
 
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NC_007949  Bpro_5096  tripartite ATP-independent periplasmic transporter DctQ  28.67 
 
 		 174 aa  47.4  0.00008  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
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NC_007802  Jann_3247  tripartite ATP-independent periplasmic transporter DctQ  29.41 
 
 		 174 aa  47  0.0001  Jannaschia sp. CCS1  Bacteria  normal  0.178122  normal  0.0888177 
 
 
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NC_009485  BBta_4095  TRAP-type C4-dicarboxylate transporter small and large permease  29.37 
 
 		 628 aa  46.2  0.0002  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  0.0585194 
 
 
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NC_009654  Mmwyl1_3945  tripartite ATP-independent periplasmic transporter DctQ  25.17 
 
 		 157 aa  45.1  0.0004  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008687  Pden_3385  tripartite ATP-independent periplasmic transporter DctQ  26.52 
 
 		 186 aa  44.3  0.0008  Paracoccus denitrificans PD1222  Bacteria  normal  1  normal  0.915417 
 
 
-
 
NC_010505  Mrad2831_3006  TRAP dicarboxylate transporter, DctM subunit  30.82 
 
 		 630 aa  43.9  0.0009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
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NC_010524  Lcho_0822  TRAP C4-dicarboxylate transport system permease DctM subunit  26.24 
 
 		 628 aa  41.6  0.004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
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NC_012792  Vapar_5667  TRAP C4-dicarboxylate transport system permease DctM subunit  29.93 
 
 		 622 aa  42  0.004  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
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NC_008709  Ping_2934  tripartite ATP-independent periplasmic transporter DctQ  24 
 
 		 187 aa  41.2  0.006  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  0.65832 
 
 
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NC_007948  Bpro_0034  TRAP C4-dicarboxylate transport system permease DctM subunit  27.27 
 
 		 627 aa  41.2  0.006  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007348  Reut_B5222  TRAP dicarboxylate transporter, DctM subunit  29.25 
 
 		 634 aa  40.8  0.008  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
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