Gene Vapar_5667 details

Gene Information

• Locus tag: Vapar_5667
• ID: 7975720
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: -
• Start bp: 373425
• End bp: 375293
• Gene Length: 1869 bp
• Protein Length: 622 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 644796250
• Product: TRAP C4-dicarboxylate transport system permease DctM subunit
• Protein accession: YP_002947524
• Protein GI: 239820339
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCGGGC CGGCCCTCGG CCTGGCGGCC GGCGCGCGGG TGGATGCGCC CCGGCTGTCG 
GCCATCGAGC GCCGGCTCGG CATGCTGGTC GACATGGCGG CCGGCGGCCT GGTGCTGGCC 
GACGTGGCGG TGCTGCTGGC GGGCGTGCTC GCGCGCTTCG TGTTCCACAG CCCGCTGGTC 
TGGTCCGACG AGCTCGCGTC GATCCTGTTC ATCTGGCTCG CGATGCTGGG CGCGGTGGTC 
GCGCTGCGGC GCGGCGAGCA CATGCGCATG ACGGCGCTGG TTTCGATGCA GCCGCCATCG 
CGGCGCCCGC TGTTCGAGGC CCTGGCGCTG TGTGCCTCGC TCGCGTTCCT GGCGATGGTG 
GCATGGCCGG CCTGGGAGTA CGCGTCGGAG GAGCGCTTCA TCACCACGCC CGCGCTCGAC 
ATCTCGAATG CGTGGCGGGC TGCGGCGCTG CCGGTGGGTG TGGGCCTGAT GGGCCTGTTC 
GCGGTGCTCA GGCTGCTGCG CGATGTGGAG TGGCGCATTA CGGCCAAGGC GGTGGCGATC 
GTGGCCACGC TGGTGGTGGC GTTCACGCTG GGCCGCTCGG TGTTCCAGGA GCTCGGTCGG 
CTGAACCTGC TGGTGTTCTT CGTCGGCGTG GTGCTGGCGG GCGTGCTCGC GGGCATTCCC 
ATCGCCTTTT CGTTCGGCCT TGGCACCTTC GGCTACCTGG CGCTGGCCAC CGACACGGCG 
CTGCCGGTGA TCGTGGGTCG CATGGACGAG GGCATGTCGC ACCTGATCCT GCTGGCGGTT 
CCGCTGTTCG TGTTCCTCGG CCTGCTGATC GAGATGACCG GCATGGCCAA GGCCATGGTC 
GCGTTTCTCG CGGGCCTGCT GGGGCATGTG AAAGGCGGGC TGTCGTACGT GCTGGTGGGC 
GCGATGTACC TCGTGTCGGG CATCTCGGGC TCCAAGGCGG CCGACATGGC GGCGGTGGCG 
CCGGCGCTTT TTCCCGAGAT GAAGCAGCGC GGCGCGAGCG AGGGCGAGCT CGTCGCGCTG 
CTGGCCGCGA CCGGCGCGCA GACCGAGACG GTGCCGCCCA GCCTGGTGCT GATCACCATC 
GGCTCGGTCA CGGGCGTGTC GATTGCCGCG CTGTTCACGG GCGGCCTGCT GCCGGCCGTG 
GTGCTGGGCC TGATGCTGTG CGTGGTCGTG TACTTCCGCT GCCGCGGCGA GGACCTGCGC 
GAGGTCGTGC GCACGCCGTG GCGCGAGGTC GGCCGGCTGG CCGTCGTGGC GCTGCCGGCG 
CTGGCGCTGC CGTTCGTGAT CCGCGCGGCG GTGGTCGAAG GCGTGGCCAC CGCCACCGAG 
GTGTCGACCA TCGGCATCAT GTACGCCGTG GTCGCGGGGC TCGTCGTGTA CCGGCAGTTC 
GACTGGAAGC GTCTCGGGCC GATGCTCGTT GCGACGGCGT CGCTGTCGGG CGCCATCCTG 
CTGATCATCG GCACCGCGAC CGCCATGGCC TGGGGCCTCA CGCAGTCGGG CTTCTCGCGC 
CTGCTGGCCG AAGCGATGAC CGGCCTGCCC GGCGGCGCGC CGATGTTCCT GGCGGTGTCG 
CTGGTGATCT TCGTGGTGCT GGGCAGCGTG CTCGAGGGCA TCCCGGCCAT CGTGCTGTTC 
GGGCCGCTGC TGTTTCCGAT AGCGCGCCAG TTGGGCATCC ACGAGGTGCA CTACGCGATG 
GTGGTGGTGC TGTCGATGGG CCTCGGCCTG TTCGCGCCGC CGCTGGGCGT GGGCTACTAC 
GCGGCCTGCG CGATCGGCCG CGTGCATCCT GACGCGGGCA TTCGCCCGAT TGCAGGCTAC 
ATGGTGGCGC TGCTGGTGGG GACGATTGCG GTGGCGGCGA TTCCTTGGCT GTCCATCGGG 
TTTCTTTGA 

 

Protein sequence

MSGPALGLAA GARVDAPRLS AIERRLGMLV DMAAGGLVLA DVAVLLAGVL ARFVFHSPLV 
WSDELASILF IWLAMLGAVV ALRRGEHMRM TALVSMQPPS RRPLFEALAL CASLAFLAMV 
AWPAWEYASE ERFITTPALD ISNAWRAAAL PVGVGLMGLF AVLRLLRDVE WRITAKAVAI 
VATLVVAFTL GRSVFQELGR LNLLVFFVGV VLAGVLAGIP IAFSFGLGTF GYLALATDTA 
LPVIVGRMDE GMSHLILLAV PLFVFLGLLI EMTGMAKAMV AFLAGLLGHV KGGLSYVLVG 
AMYLVSGISG SKAADMAAVA PALFPEMKQR GASEGELVAL LAATGAQTET VPPSLVLITI 
GSVTGVSIAA LFTGGLLPAV VLGLMLCVVV YFRCRGEDLR EVVRTPWREV GRLAVVALPA 
LALPFVIRAA VVEGVATATE VSTIGIMYAV VAGLVVYRQF DWKRLGPMLV ATASLSGAIL 
LIIGTATAMA WGLTQSGFSR LLAEAMTGLP GGAPMFLAVS LVIFVVLGSV LEGIPAIVLF 
GPLLFPIARQ LGIHEVHYAM VVVLSMGLGL FAPPLGVGYY AACAIGRVHP DAGIRPIAGY 
MVALLVGTIA VAAIPWLSIG FL