Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bpro_0034 |
Symbol | |
ID | 4012407 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas sp. JS666 |
Kingdom | Bacteria |
Replicon accession | NC_007948 |
Strand | - |
Start bp | 34935 |
End bp | 36818 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637939720 |
Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
Protein accession | YP_546899 |
Protein GI | 91785947 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCACG CCCCTTCTCC CGTCGCTGCC GATGCCCTGC CAGCCAATGC GCTGAGCGGC CTGGCCCACG GCGTGGACCG GGGCCTGGGC GCGGTGGTCG AAACCATCGC AGCCGGGCTG GTGCTGGCCG AAATCATCGT GCTGTTCGCC GGCGTAGTCT CGCGCTATGT CTTTCACCAG CCGCTGGTCT GGTCGGACGA GCTCGCGTCC ATCATGTTTT TGTGGCTGTC CATGCTGGGC GCCGTCGTCG CGCTGCGCCG CGGCGAACAC ATGCGCATGA CGGCGCTGGT CAACCACGTC CAGCCGCACA CCCGTGCCCT GCTCGACACC GTGGCCATCA CCGCCTCGCT CGCGTTTTTG GTGCTGGTGC TGTTTCCAGC CGGTGAATAT GCCTATGAAG AAACCTTCAT CGTCACGCCG GCACTGGAGA TCAGCAACGG CTGGCGCGCC TCGGCCATTC CGGTGGGCAT GGGGCTGATG ATCATCGTGG CCCTGCTGCG GCTGCTGCGC ATCAGCAGCT TCCAGCAGAT CGCCCTCGCG TTGGCCGGCA CGGCCGCCGT GGTGCTGGCC TTCTGGCTGG CGCAACCCCT GCTCGCGCCG CTGGGCAAGG TCAATCTGGT GATCTTCTTC GTGCTGGTGG TGGCGGCCAA TGTGTTCTCC GGCGTGCCGA TTGCCTTCTC GTTCGCGCTG GCCACGTTTG GCTACCTCGC GCTCACCACC CAAACCCCGC TGCTGGTCAT GGTGGGCCGG CTCGACGAAG GCATGTCGCA CCTGATCCTG CTGGCGGTGC CGCTGTTCAT CTTCCTGGGC GCGCTGATCG AAATGACCGG CATGGCCAAG GCCATGATCC AGTTCCTGGC CAGCCTGCTG GGCCATGTGC GCGGCGGCCT CAGCTATGTG CTGATCGGTG CCATGTACCT GGTGTCGGGC ATCTCGGGCT CCAAGATCGC CGACATGGCC GCGATTGCGC CGGTGCTTTT CCCTGAAATG AAAAAGCGCG GCGCCAAACC GGGCGACCTG GTGGCGCTGC TGTCGGCCAC CGGCGCTCAG ACCGAAACCA TTCCGCCGTC GATCGTGCTG ATCACGATCG GCTCGGTCAC CGGTGTCTCG ATAGCCGCGC TGTTCACGGG CGGCCTGCTG CCAGCCGTGG TGCTGGGTGC CGCGCTGTGC GCCGTCGTCT GGTGGCGCTA CCGTGGTGAA GATCTGAGCG GCGTCACGCG CTACGGCAAA CGCGAAATCG GCAAGCTGCT GCTGATCGCC CTGCCCGCCA TCGTGCTGCC CTTCGTGATT CGCGCGGCCG TCGTGGAAGG CGTGGCCACC GCCACCGAGG TCTCCACCAT CGGCATCGTC TATTCGGTGC TGGCCGGCTT GCTGCTGTAC CGCCGGTTCG CGTGGCGCCG CCTCATGCCC ATGCTGGTCG AAACCGCATC GCTGACCGGC GCCATCATCT TCATCGTGGG CTGCGCCACC GCCATGGCCT GGGGCCTCAC GCAGTCGGGC TTCTCGCAGG ACCTGGCCGG CATCATGGGC AGCCTGCCCG GCGGTGCCTA CGGCTTTCTG GCCGTGTCCA TCGTCGCCTT CATCGTGCTG GGCAGCGTGC TGGAGGGCAT TCCCGCCATC GTGCTGTTTG GCCCGCTGCT GTTTCCCATC GCCAAGGCGG CCGGCGTGCA TGAAGTGCAC TACGCCATGG TCGTGATCTT CGCCATGGGC ATCGGCCTCT TCGCGCCGCC TTTCGGTGTC GGCTATTACG GCGCCTGCGC GGTCAGCAAG GTCGACCCGG ACGACGGCAT CCCGCACATC TGGGCTTACT TCGGCGCCCT GCTGGTCGGC CTCATCGTGG TCGCGGCCAT TCCCTGGTTC TCCACCGGCT TCCTCAAAAA CTAA
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Protein sequence | MSHAPSPVAA DALPANALSG LAHGVDRGLG AVVETIAAGL VLAEIIVLFA GVVSRYVFHQ PLVWSDELAS IMFLWLSMLG AVVALRRGEH MRMTALVNHV QPHTRALLDT VAITASLAFL VLVLFPAGEY AYEETFIVTP ALEISNGWRA SAIPVGMGLM IIVALLRLLR ISSFQQIALA LAGTAAVVLA FWLAQPLLAP LGKVNLVIFF VLVVAANVFS GVPIAFSFAL ATFGYLALTT QTPLLVMVGR LDEGMSHLIL LAVPLFIFLG ALIEMTGMAK AMIQFLASLL GHVRGGLSYV LIGAMYLVSG ISGSKIADMA AIAPVLFPEM KKRGAKPGDL VALLSATGAQ TETIPPSIVL ITIGSVTGVS IAALFTGGLL PAVVLGAALC AVVWWRYRGE DLSGVTRYGK REIGKLLLIA LPAIVLPFVI RAAVVEGVAT ATEVSTIGIV YSVLAGLLLY RRFAWRRLMP MLVETASLTG AIIFIVGCAT AMAWGLTQSG FSQDLAGIMG SLPGGAYGFL AVSIVAFIVL GSVLEGIPAI VLFGPLLFPI AKAAGVHEVH YAMVVIFAMG IGLFAPPFGV GYYGACAVSK VDPDDGIPHI WAYFGALLVG LIVVAAIPWF STGFLKN
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