Gene Bpro_0034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_0034 
Symbol 
ID4012407 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand
Start bp34935 
End bp36818 
Gene Length1884 bp 
Protein Length627 aa 
Translation table11 
GC content66% 
IMG OID637939720 
ProductTRAP C4-dicarboxylate transport system permease DctM subunit 
Protein accessionYP_546899 
Protein GI91785947 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component 
TIGRFAM ID[TIGR00786] TRAP transporter, DctM subunit 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCACG CCCCTTCTCC CGTCGCTGCC GATGCCCTGC CAGCCAATGC GCTGAGCGGC 
CTGGCCCACG GCGTGGACCG GGGCCTGGGC GCGGTGGTCG AAACCATCGC AGCCGGGCTG
GTGCTGGCCG AAATCATCGT GCTGTTCGCC GGCGTAGTCT CGCGCTATGT CTTTCACCAG
CCGCTGGTCT GGTCGGACGA GCTCGCGTCC ATCATGTTTT TGTGGCTGTC CATGCTGGGC
GCCGTCGTCG CGCTGCGCCG CGGCGAACAC ATGCGCATGA CGGCGCTGGT CAACCACGTC
CAGCCGCACA CCCGTGCCCT GCTCGACACC GTGGCCATCA CCGCCTCGCT CGCGTTTTTG
GTGCTGGTGC TGTTTCCAGC CGGTGAATAT GCCTATGAAG AAACCTTCAT CGTCACGCCG
GCACTGGAGA TCAGCAACGG CTGGCGCGCC TCGGCCATTC CGGTGGGCAT GGGGCTGATG
ATCATCGTGG CCCTGCTGCG GCTGCTGCGC ATCAGCAGCT TCCAGCAGAT CGCCCTCGCG
TTGGCCGGCA CGGCCGCCGT GGTGCTGGCC TTCTGGCTGG CGCAACCCCT GCTCGCGCCG
CTGGGCAAGG TCAATCTGGT GATCTTCTTC GTGCTGGTGG TGGCGGCCAA TGTGTTCTCC
GGCGTGCCGA TTGCCTTCTC GTTCGCGCTG GCCACGTTTG GCTACCTCGC GCTCACCACC
CAAACCCCGC TGCTGGTCAT GGTGGGCCGG CTCGACGAAG GCATGTCGCA CCTGATCCTG
CTGGCGGTGC CGCTGTTCAT CTTCCTGGGC GCGCTGATCG AAATGACCGG CATGGCCAAG
GCCATGATCC AGTTCCTGGC CAGCCTGCTG GGCCATGTGC GCGGCGGCCT CAGCTATGTG
CTGATCGGTG CCATGTACCT GGTGTCGGGC ATCTCGGGCT CCAAGATCGC CGACATGGCC
GCGATTGCGC CGGTGCTTTT CCCTGAAATG AAAAAGCGCG GCGCCAAACC GGGCGACCTG
GTGGCGCTGC TGTCGGCCAC CGGCGCTCAG ACCGAAACCA TTCCGCCGTC GATCGTGCTG
ATCACGATCG GCTCGGTCAC CGGTGTCTCG ATAGCCGCGC TGTTCACGGG CGGCCTGCTG
CCAGCCGTGG TGCTGGGTGC CGCGCTGTGC GCCGTCGTCT GGTGGCGCTA CCGTGGTGAA
GATCTGAGCG GCGTCACGCG CTACGGCAAA CGCGAAATCG GCAAGCTGCT GCTGATCGCC
CTGCCCGCCA TCGTGCTGCC CTTCGTGATT CGCGCGGCCG TCGTGGAAGG CGTGGCCACC
GCCACCGAGG TCTCCACCAT CGGCATCGTC TATTCGGTGC TGGCCGGCTT GCTGCTGTAC
CGCCGGTTCG CGTGGCGCCG CCTCATGCCC ATGCTGGTCG AAACCGCATC GCTGACCGGC
GCCATCATCT TCATCGTGGG CTGCGCCACC GCCATGGCCT GGGGCCTCAC GCAGTCGGGC
TTCTCGCAGG ACCTGGCCGG CATCATGGGC AGCCTGCCCG GCGGTGCCTA CGGCTTTCTG
GCCGTGTCCA TCGTCGCCTT CATCGTGCTG GGCAGCGTGC TGGAGGGCAT TCCCGCCATC
GTGCTGTTTG GCCCGCTGCT GTTTCCCATC GCCAAGGCGG CCGGCGTGCA TGAAGTGCAC
TACGCCATGG TCGTGATCTT CGCCATGGGC ATCGGCCTCT TCGCGCCGCC TTTCGGTGTC
GGCTATTACG GCGCCTGCGC GGTCAGCAAG GTCGACCCGG ACGACGGCAT CCCGCACATC
TGGGCTTACT TCGGCGCCCT GCTGGTCGGC CTCATCGTGG TCGCGGCCAT TCCCTGGTTC
TCCACCGGCT TCCTCAAAAA CTAA
 
Protein sequence
MSHAPSPVAA DALPANALSG LAHGVDRGLG AVVETIAAGL VLAEIIVLFA GVVSRYVFHQ 
PLVWSDELAS IMFLWLSMLG AVVALRRGEH MRMTALVNHV QPHTRALLDT VAITASLAFL
VLVLFPAGEY AYEETFIVTP ALEISNGWRA SAIPVGMGLM IIVALLRLLR ISSFQQIALA
LAGTAAVVLA FWLAQPLLAP LGKVNLVIFF VLVVAANVFS GVPIAFSFAL ATFGYLALTT
QTPLLVMVGR LDEGMSHLIL LAVPLFIFLG ALIEMTGMAK AMIQFLASLL GHVRGGLSYV
LIGAMYLVSG ISGSKIADMA AIAPVLFPEM KKRGAKPGDL VALLSATGAQ TETIPPSIVL
ITIGSVTGVS IAALFTGGLL PAVVLGAALC AVVWWRYRGE DLSGVTRYGK REIGKLLLIA
LPAIVLPFVI RAAVVEGVAT ATEVSTIGIV YSVLAGLLLY RRFAWRRLMP MLVETASLTG
AIIFIVGCAT AMAWGLTQSG FSQDLAGIMG SLPGGAYGFL AVSIVAFIVL GSVLEGIPAI
VLFGPLLFPI AKAAGVHEVH YAMVVIFAMG IGLFAPPFGV GYYGACAVSK VDPDDGIPHI
WAYFGALLVG LIVVAAIPWF STGFLKN