Gene Reut_B5222 details

Gene Information

• Locus tag: Reut_B5222
• ID: 3614070
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia eutropha JMP134
• Kingdom: Bacteria
• Replicon accession: NC_007348
• Strand: -
• Start bp: 1968766
• End bp: 1970670
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 637694648
• Product: TRAP dicarboxylate transporter, DctM subunit
• Protein accession: YP_299412
• Protein GI: 73539045
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component; [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component
• TIGRFAM ID: [TIGR00786] TRAP transporter, DctM subunit

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCACGC ATATGGTCGA TATCAATCCC CCGGGCATAG AGTCCCATGC CGGGGCGCTT 
TCGGGCGGCG CACCGGCGCG CACGCTGCGG CTGGCTGACA AGGCGCTCGG CGTTGTGTCC 
GAAGTGCCGG CGGCCCTGCT CGTGGTGGCC GAGATCGGCG TGCTGTTCAG CGGCGTGCTG 
AGCCGCTATG TCCTGCACAC GCCGCTGGTG TGGGTCGACG AGCTGGCGTC GCTGTTGTTC 
ATCTGGCTCA TCATGCTCGG CGCCGCGGTG GCGTTCCGGC GCGGCAGCCA TATGCGCATG 
ACGGCGCTCG TTGATGCCGC AGCGCCGAAA TGGCGCGGCG TGTTCGAACT CGTGGCAACG 
GTGGCGGCGC TGACGTGGCT CGTGCTGGTC GCGCATCCCG CTTATGAATT CGCGAGTGAG 
GAAGCCGCCG TGACCATGCC GGCACTGGAC ATCTCCAACG CCTGGCGTGC CGCCGCGCTG 
CCGCTCGGCA TCGCGCTGAT CCTGCTGATG AGCGTGGTGC GGCTGCTGTC CACCTCCAGC 
CTGCGAATGG TGTTGGTGGC ACTGGTCGCA TGCGCTGGGG TCGTGGGCGG CCTTGTGCTG 
CTGCAGCCTG CCTTGCAAGA ACTCGGCAAT GCCAACCTGC TGGTGTTCTT TGTCGGCATC 
GTTGGCCTGC TGGTGTTCAC GGGCGTGCCG ATCGCATTCT CGTTCGGCCT AGCGACGTTC 
GGCTATCTGT CGCTGACTAC GTCCACGCCG ACCATTGTCG TGATCGGCCG CATGGACGAA 
GGCATGTCGC ACCTGATCCT GCTCGCGGTG CCGATGTTCG TGTTCCTCGG CGTGCTGATC 
GAGATGACGT CGATGGCGCG CGCCATGGTG CAGTTCCTGG CCAACCTGCT CGGCCATATC 
CGTGGCGGCC TGTCGTATGT GCTGATCGGG GCGATGTATC TCGTCTCCGG CATCTCGGGC 
TCCAAGGCGG CGGACATGGC AGCCGTGGCG CCGGCGCTGT TTCCCGAGAT GAAGAAGCGC 
GGCGCCGATG ATGGCGACAT GGTCGCGCTG CTTGCGGCGA CCGGCGCGCA GACGGAGACG 
GTGCCGCCGA GCCTGGTGCT GATCACCATC GGCTCAGTGA CCGGCATCTC CATTGCCGAC 
CTGTTCACCG CCGGATTGAT GCCGGGCATT GTGCTGGCAC TCGTGCTCGG CCTGGTCGTG 
TGGTGGCAGG CCCGCAAGAG CGGCAGCGCC TGCAGCGCGC GTGCCACGCG GGCCATGATC 
GGCAAGAGTC TCGTGGTGGC ATTGCCCGCG CTCGCGCTGC CGTTCGTCGT GCGCGCCGCG 
GTGGTGGAGG GCGTGGCGAC GGCGACGGAA GTGTCCACGA TCGGCATCGT CTACGCGCTG 
ATCGTCGGGC TGCTGGTGTA CCGCAAGCTC GACCTCAGGC AACTGTGGCC CGCGCTCGTC 
GATACGGCCG CCTTGTCTGG AGCGATCCTG CTGATCATCG GCACCGCGAC CGGCATGGCC 
TGGTCGCTCA CGCAGTCGGG CTTCTCGGGT GACCTGGCAG CGGCCATGGC TCGGCTACCG 
GGGGGTGCGC CGGCTTTCAT GGCGGTCTCG ATCGTGGCCT TCGTGCTGCT TGGCAGCGTG 
CTGGAAGGCA TTCCCGCAAT CGTGCTGTTC GGCCCGCTCC TGTTTCCGAT CGCGCGCCAG 
CTGGGCATCC ATGACGTGCA TTACTCGATG GTGGTCGTAC TGGCCATGGG CATCGGCCTG 
TTCGCGCCGC CGTTCGGTGT CGGCTACTAC GCCGCCTGCG CGATCAGCCG TACCAAGCCT 
AGCGAGGGCG TGCGCCACAT CTGGCGCTAC ATGACTTTCC TGTTCATCGG CACCGTCGTC 
GTCGCGGCCG TGCCGTGGAT CTCCACCGGT TTCCTCCATC ACTGA 

 

Protein sequence

MSTHMVDINP PGIESHAGAL SGGAPARTLR LADKALGVVS EVPAALLVVA EIGVLFSGVL 
SRYVLHTPLV WVDELASLLF IWLIMLGAAV AFRRGSHMRM TALVDAAAPK WRGVFELVAT 
VAALTWLVLV AHPAYEFASE EAAVTMPALD ISNAWRAAAL PLGIALILLM SVVRLLSTSS 
LRMVLVALVA CAGVVGGLVL LQPALQELGN ANLLVFFVGI VGLLVFTGVP IAFSFGLATF 
GYLSLTTSTP TIVVIGRMDE GMSHLILLAV PMFVFLGVLI EMTSMARAMV QFLANLLGHI 
RGGLSYVLIG AMYLVSGISG SKAADMAAVA PALFPEMKKR GADDGDMVAL LAATGAQTET 
VPPSLVLITI GSVTGISIAD LFTAGLMPGI VLALVLGLVV WWQARKSGSA CSARATRAMI 
GKSLVVALPA LALPFVVRAA VVEGVATATE VSTIGIVYAL IVGLLVYRKL DLRQLWPALV 
DTAALSGAIL LIIGTATGMA WSLTQSGFSG DLAAAMARLP GGAPAFMAVS IVAFVLLGSV 
LEGIPAIVLF GPLLFPIARQ LGIHDVHYSM VVVLAMGIGL FAPPFGVGYY AACAISRTKP 
SEGVRHIWRY MTFLFIGTVV VAAVPWISTG FLHH