32 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
MCAP_0108  CDS  NC_007633  126601  127863  1263  hypothetical protein  YP_424100  decreased coverage  0.00698784  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0241  CDS  NC_007633  291884  293554  1671  hypothetical protein  YP_424228  decreased coverage  0.00938391  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0246  CDS  NC_007633  301684  302244  561  hypothetical protein  YP_424233  decreased coverage  3.83519e-06  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0265  CDS  NC_007633  320611  322023  1413  hypothetical protein  YP_424251  decreased coverage  0.000186046  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0266  CDS  NC_007633  322126  322542  417  hypothetical protein  YP_424252  decreased coverage  8.98958e-05  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0267  CDS  NC_007633  322544  323107  564  metalloendopeptidase, putative  YP_424253  decreased coverage  0.000185312  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0281  CDS  NC_007633  342461  342769  309  single-strand binding protein family  YP_424267  decreased coverage  6.59654e-05  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0282  CDS  NC_007633  342820  343560  741  hypothetical protein  YP_424268  decreased coverage  0.00050925  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0298  CDS  NC_007633  353798  354178  381  hypothetical protein  YP_424284  decreased coverage  0.00181254  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0328  CDS  NC_007633  391784  393832  2049  hypothetical protein  YP_424313  decreased coverage  0.00617065  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0354  CDS  NC_007633  434327  434821  495  hypothetical protein  YP_424338  decreased coverage  0.00124873  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0382  CDS  NC_007633  473844  474452  609  hypothetical protein  YP_424362  decreased coverage  0.00209611  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0383  CDS  NC_007633  474483  475535  1053  phenylalanyl-tRNA synthetase subunit alpha  YP_424363  decreased coverage  0.00065733  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0424  CDS  NC_007633  509967  511070  1104  hypothetical protein  YP_424399  decreased coverage  0.00290695  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0425  CDS  NC_007633  511079  511999  921  hypothetical protein  YP_424400  decreased coverage  0.000281098  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0436  CDS  NC_007633  522507  523106  600  hypothetical protein  YP_424410  decreased coverage  7.65522e-05  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0438  CDS  NC_007633  524021  525178  1158  N-acetylglucosamine-6-phosphate deacetylase  YP_424412  decreased coverage  0.00333124  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0452  CDS  NC_007633  538184  538987  804  glycerol ABC transporter, permease  YP_424426  decreased coverage  0.00260112  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0507  CDS  NC_007633  605710  606615  906  GTP-binding protein Era  YP_424480  decreased coverage  0.000333853  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0509  CDS  NC_007633  607118  609007  1890  peptidase C39 family protein  YP_424482  decreased coverage  0.00292307  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0525  CDS  NC_007633  634769  635542  774  putative lipoprotein  YP_424497  decreased coverage  0.00161155  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0526  CDS  NC_007633  635564  636367  804  putative lipoprotein  YP_424498  decreased coverage  0.000556761  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0527  CDS  NC_007633  636581  637225  645  hypothetical protein  YP_424499  decreased coverage  0.00172454  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0531  CDS  NC_007633  639292  640053  762  NH3-dependent NAD+ synthetase  YP_424503  decreased coverage  0.000693005  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0539  CDS  NC_007633  648243  648548  306  single-strand binding protein family  YP_424510  decreased coverage  0.00968911  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0572  CDS  NC_007633  685488  685865  378  hypothetical protein  YP_424541  decreased coverage  0.00894752  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0573  CDS  NC_007633  685929  686438  510  recombination protein U, putative  YP_424542  decreased coverage  0.00536427  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0621  CDS  NC_007633  738045  738590  546  hypothetical protein  YP_424589  decreased coverage  0.000476365  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0718  CDS  NC_007633  834250  834996  747  hypothetical protein  YP_424678  decreased coverage  0.0015511  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0761  CDS  NC_007633  878052  878714  663  tRNA (guanine-N(7)-)-methyltransferase  YP_424711  decreased coverage  0.00972372  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0796  CDS  NC_007633  918301  919653  1353  putative lipoprotein  YP_424744  decreased coverage  0.00273417  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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MCAP_0844  CDS  NC_007633  975036  976778  1743  PTS system glucose-specific IIBC component  YP_424786  decreased coverage  0.00216486  n/a    Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria 
 
 
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