More than 300 homologs were found in PanDaTox collection
for query gene Smed_5653 on replicon NC_009621
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009621  Smed_5653  acyl-CoA dehydrogenase type 2  100 
 
 
410 aa  822    Sinorhizobium medicae WSM419  Bacteria  normal  0.329683  normal  0.865966 
 
 
-
 
NC_010581  Bind_1847  acyl-CoA dehydrogenase type 2  56.2 
 
 
382 aa  421  1e-116  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.25699  normal 
 
 
-
 
NC_009485  BBta_2584  putative acyl-CoA dehydrogenase  52.92 
 
 
398 aa  376  1e-103  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0375347 
 
 
-
 
NC_011981  Avi_7179  acyl-CoA dehydrogenase  52.14 
 
 
394 aa  376  1e-103  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2659  acyl-CoA dehydrogenase type 2  47.38 
 
 
390 aa  316  5e-85  Caulobacter sp. K31  Bacteria  normal  normal  0.387509 
 
 
-
 
NC_012791  Vapar_3873  Acyl-CoA dehydrogenase type 2 domain protein  48.23 
 
 
411 aa  314  1.9999999999999998e-84  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4154  acyl-CoA dehydrogenase domain-containing protein  44.5 
 
 
440 aa  311  1e-83  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.233252 
 
 
-
 
NC_008391  Bamb_3681  acyl-CoA dehydrogenase domain-containing protein  45.29 
 
 
442 aa  310  2.9999999999999997e-83  Burkholderia ambifaria AMMD  Bacteria  normal  0.902105  normal 
 
 
-
 
NC_012857  Rpic12D_4596  Acyl-CoA dehydrogenase type 2 domain protein  45.34 
 
 
402 aa  309  5e-83  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4462  Acyl-CoA dehydrogenase type 2 domain  45.34 
 
 
402 aa  309  5e-83  Ralstonia pickettii 12J  Bacteria  normal  normal  0.542965 
 
 
-
 
NC_010515  Bcenmc03_3260  acyl-CoA dehydrogenase domain-containing protein  46.19 
 
 
459 aa  309  5.9999999999999995e-83  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_5014  acyl-CoA dehydrogenase type 2  43.67 
 
 
384 aa  309  5.9999999999999995e-83  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1390  Acyl-CoA dehydrogenase type 2 domain protein  46.24 
 
 
384 aa  306  5.0000000000000004e-82  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00428618  n/a   
 
 
-
 
NC_007005  Psyr_3604  Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region  44.59 
 
 
393 aa  305  1.0000000000000001e-81  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.339437 
 
 
-
 
NC_011666  Msil_2670  Acyl-CoA dehydrogenase type 2 domain protein  46.07 
 
 
389 aa  302  8.000000000000001e-81  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008061  Bcen_4109  Acyl-CoA dehydrogenase, type 2-like  44.91 
 
 
452 aa  300  2e-80  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.381793  n/a   
 
 
-
 
NC_008543  Bcen2424_4257  acyl-CoA dehydrogenase type 2  44.91 
 
 
452 aa  300  2e-80  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00125865  normal  0.295507 
 
 
-
 
NC_007511  Bcep18194_B1754  Acyl-CoA dehydrogenase  45.33 
 
 
454 aa  298  1e-79  Burkholderia sp. 383  Bacteria  normal  normal  0.0688656 
 
 
-
 
NC_007973  Rmet_2217  Acyl-CoA dehydrogenase  46.53 
 
 
402 aa  297  2e-79  Cupriavidus metallidurans CH34  Bacteria  normal  0.0777616  normal  0.101595 
 
 
-
 
NC_012560  Avin_31100  Acyl-CoA dehydrogenase family protein  44.56 
 
 
396 aa  297  2e-79  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2538  acyl-CoA dehydrogenase type 2  42.51 
 
 
378 aa  296  5e-79  Pseudomonas putida GB-1  Bacteria  normal  0.844573  decreased coverage  0.00557828 
 
 
-
 
NC_004578  PSPTO_1790  acyl-CoA dehydrogenase family protein  43.8 
 
 
397 aa  294  2e-78  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_3307  putative acyl-CoA dehydrogenase  45.16 
 
 
394 aa  291  1e-77  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3226  acyl-CoA dehydrogenase-related protein  42.54 
 
 
380 aa  285  7e-76  Pseudomonas putida KT2440  Bacteria  normal  0.690171  normal 
 
 
-
 
NC_012560  Avin_21570  Acyl-CoA dehydrogenase family protein  44.14 
 
 
400 aa  283  5.000000000000001e-75  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0523  acyl-CoA dehydrogenase type 2  43.65 
 
 
407 aa  282  8.000000000000001e-75  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5139  putative acyl-CoA dehydrogenase  42.67 
 
 
399 aa  281  1e-74  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0630041 
 
 
-
 
NC_010725  Mpop_4897  acyl-CoA dehydrogenase domain protein  45.5 
 
 
381 aa  281  2e-74  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4333  acyl-CoA dehydrogenase type 2  42.67 
 
 
440 aa  280  3e-74  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.619225  normal  0.220534 
 
 
-
 
NC_009485  BBta_1981  putative acyl-CoA dehydrogenase  43.18 
 
 
388 aa  275  1.0000000000000001e-72  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_30500  putative acyl-CoA dehydrogenase  44.59 
 
 
383 aa  271  2e-71  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5046  Acyl-CoA dehydrogenase, C-terminal  44.19 
 
 
402 aa  268  1e-70  Ralstonia eutropha JMP134  Bacteria  normal  0.721222  n/a   
 
 
-
 
NC_011757  Mchl_1330  acyl-CoA dehydrogenase domain protein  42.78 
 
 
381 aa  266  5e-70  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.135454  normal  0.523473 
 
 
-
 
NC_010172  Mext_1170  acyl-CoA dehydrogenase domain-containing protein  42.86 
 
 
381 aa  266  5e-70  Methylobacterium extorquens PA1  Bacteria  normal  0.665446  normal  0.0188326 
 
 
-
 
NC_013131  Caci_2770  ccyl-CoA dehydrogenase type 2 domain protein  40.55 
 
 
406 aa  253  4.0000000000000004e-66  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.271017  normal 
 
 
-
 
NC_010505  Mrad2831_4840  acyl-CoA dehydrogenase type 2  44.71 
 
 
381 aa  237  3e-61  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.910203 
 
 
-
 
NC_013525  Tter_1183  Acyl-CoA dehydrogenase type 2 domain protein  34.97 
 
 
390 aa  225  9e-58  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011988  Avi_5178  acyl-CoA dehydrogenase-related protein  37.92 
 
 
393 aa  215  9.999999999999999e-55  Agrobacterium vitis S4  Bacteria  normal  0.897204  n/a   
 
 
-
 
NC_009921  Franean1_2020  acyl-CoA dehydrogenase type 2  36.47 
 
 
394 aa  213  4.9999999999999996e-54  Frankia sp. EAN1pec  Bacteria  normal  0.692035  normal  0.294025 
 
 
-
 
NC_009523  RoseRS_0478  acyl-CoA dehydrogenase domain-containing protein  35.14 
 
 
396 aa  209  1e-52  Roseiflexus sp. RS-1  Bacteria  normal  0.859047  normal 
 
 
-
 
NC_009921  Franean1_3756  acyl-CoA dehydrogenase type 2  35 
 
 
418 aa  206  7e-52  Frankia sp. EAN1pec  Bacteria  normal  0.326681  normal 
 
 
-
 
NC_013411  GYMC61_2547  Acyl-CoA dehydrogenase type 2 domain protein  34.11 
 
 
392 aa  202  9e-51  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_1626  Acyl-CoA dehydrogenase type 2 domain protein  33.97 
 
 
387 aa  199  7e-50  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0955  Acyl-CoA dehydrogenase type 2 domain protein  34.53 
 
 
398 aa  197  4.0000000000000005e-49  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0150  acyl-CoA dehydrogenase domain-containing protein  33.51 
 
 
394 aa  192  1e-47  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B2142  putative acyl-CoA dehydrogenase, short-chain specific  30.75 
 
 
382 aa  189  1e-46  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_2881  acyl-CoA dehydrogenase type 2  30.75 
 
 
382 aa  187  2e-46  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.255861  n/a   
 
 
-
 
NC_013093  Amir_4313  acyl-CoA dehydrogenase type 2 domain protein  35.31 
 
 
397 aa  188  2e-46  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A3094  putative acyl-CoA dehydrogenase, short-chain specific  30.75 
 
 
382 aa  186  6e-46  Bacillus cereus B4264  Bacteria  normal  0.952201  n/a   
 
 
-
 
NC_006274  BCZK2818  acyl-CoA dehydrogenase, short-chain specific  30.21 
 
 
382 aa  186  7e-46  Bacillus cereus E33L  Bacteria  normal  0.149479  n/a   
 
 
-
 
NC_011658  BCAH187_A3128  putative acyl-CoA dehydrogenase, short-chain specific  30.21 
 
 
382 aa  186  7e-46  Bacillus cereus AH187  Bacteria  hitchhiker  0.000407188  n/a   
 
 
-
 
NC_005945  BAS2889  acyl-CoA dehydrogenase, short-chain specific  30.21 
 
 
382 aa  185  1.0000000000000001e-45  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.00742766  n/a   
 
 
-
 
NC_007530  GBAA_3105  acyl-CoA dehydrogenase, short-chain specific  30.21 
 
 
382 aa  185  1.0000000000000001e-45  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.362062  n/a   
 
 
-
 
NC_011773  BCAH820_3109  putative acyl-CoA dehydrogenase, short-chain specific  30.21 
 
 
382 aa  184  3e-45  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009674  Bcer98_2066  acyl-CoA dehydrogenase type 2  29.76 
 
 
384 aa  184  3e-45  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.335702  n/a   
 
 
-
 
NC_005957  BT9727_2857  acyl-CoA dehydrogenase, short-chain specific  29.95 
 
 
382 aa  182  1e-44  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.25076  n/a   
 
 
-
 
NC_003909  BCE_3126  acyl-CoA dehydrogenase, short-chain specific, putative  29.14 
 
 
382 aa  175  9.999999999999999e-43  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00757934  n/a   
 
 
-
 
NC_007777  Francci3_2419  Acyl-CoA dehydrogenase  35.44 
 
 
332 aa  166  5e-40  Frankia sp. CcI3  Bacteria  normal  0.238624  normal  0.291589 
 
 
-
 
NC_002976  SERP1866  acyl-CoA dehydrogenase-related protein  29.1 
 
 
381 aa  165  2.0000000000000002e-39  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2352  acyl-CoA dehydrogenase type 2  27.69 
 
 
384 aa  160  4e-38  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.657423  n/a   
 
 
-
 
NC_009487  SaurJH9_2310  acyl-CoA dehydrogenase type 2  27.69 
 
 
384 aa  160  4e-38  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.154104  n/a   
 
 
-
 
NC_009972  Haur_2304  acyl-CoA dehydrogenase type 2  31.79 
 
 
392 aa  146  6e-34  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0799931  n/a   
 
 
-
 
NC_008025  Dgeo_1231  Acyl-CoA dehydrogenase, type 2-like protein  33.24 
 
 
384 aa  132  2.0000000000000002e-29  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.279686  normal 
 
 
-
 
NC_013205  Aaci_2056  acyl-CoA dehydrogenase domain protein  29.62 
 
 
377 aa  125  9e-28  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.232194  n/a   
 
 
-
 
NC_005957  BT9727_2327  acyl-CoA dehydrogenase  27.95 
 
 
381 aa  124  4e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2560  acyl-CoA dehydrogenase  27.95 
 
 
381 aa  124  4e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  4.1486499999999994e-20 
 
 
-
 
NC_010184  BcerKBAB4_2355  acyl-CoA dehydrogenase domain-containing protein  28.74 
 
 
381 aa  122  8e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.774843  n/a   
 
 
-
 
NC_011658  BCAH187_A2603  acyl-CoA dehydrogenase  27.95 
 
 
381 aa  122  9.999999999999999e-27  Bacillus cereus AH187  Bacteria  normal  0.608519  n/a   
 
 
-
 
NC_003909  BCE_2548  acyl-CoA dehydrogenase  27.95 
 
 
381 aa  122  9.999999999999999e-27  Bacillus cereus ATCC 10987  Bacteria  normal  0.438014  n/a   
 
 
-
 
NC_006274  BCZK2285  acyl-CoA dehydrogenase  27.95 
 
 
381 aa  122  9.999999999999999e-27  Bacillus cereus E33L  Bacteria  normal  0.769883  n/a   
 
 
-
 
NC_011725  BCB4264_A2511  acyl-CoA dehydrogenase  27.95 
 
 
381 aa  122  9.999999999999999e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2812  acyl-CoA dehydrogenase  27.95 
 
 
381 aa  122  9.999999999999999e-27  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.000163693 
 
 
-
 
NC_005945  BAS2369  acyl-CoA dehydrogenase  27.95 
 
 
381 aa  122  1.9999999999999998e-26  Bacillus anthracis str. Sterne  Bacteria  normal  0.73982  n/a   
 
 
-
 
NC_007530  GBAA_2547  acyl-CoA dehydrogenase  27.67 
 
 
381 aa  120  4.9999999999999996e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1802  acyl-CoA dehydrogenase domain-containing protein  27.67 
 
 
381 aa  119  7e-26  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1232  acyl-CoA dehydrogenase domain protein  27.32 
 
 
381 aa  116  7.999999999999999e-25  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2643  acyl-CoA dehydrogenase domain protein  26.46 
 
 
371 aa  112  2.0000000000000002e-23  Brachyspira murdochii DSM 12563  Bacteria  normal  0.475979  n/a   
 
 
-
 
NC_009953  Sare_4695  acyl-CoA dehydrogenase type 2  29.84 
 
 
387 aa  110  5e-23  Salinispora arenicola CNS-205  Bacteria  normal  0.46169  normal  0.258533 
 
 
-
 
NC_008009  Acid345_1131  butyryl-CoA dehydrogenase  27.55 
 
 
392 aa  108  1e-22  Candidatus Koribacter versatilis Ellin345  Bacteria  hitchhiker  0.00519609  hitchhiker  0.000110962 
 
 
-
 
NC_009718  Fnod_0585  acyl-CoA dehydrogenase domain-containing protein  26.42 
 
 
379 aa  108  2e-22  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_2082  acyl-CoA dehydrogenase domain protein  28.49 
 
 
376 aa  108  2e-22  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_009675  Anae109_2163  acyl-CoA dehydrogenase domain-containing protein  28.42 
 
 
389 aa  108  2e-22  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.820192  normal  0.287496 
 
 
-
 
NC_009714  CHAB381_1168  putative acyl-coa dehydrogenase  25.98 
 
 
372 aa  105  2e-21  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0092  butyryl-CoA dehydrogenase  24.59 
 
 
378 aa  105  2e-21  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013743  Htur_0919  acyl-CoA dehydrogenase domain protein  27.79 
 
 
383 aa  103  6e-21  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009380  Strop_4265  acyl-CoA dehydrogenase type 2  30.61 
 
 
387 aa  103  7e-21  Salinispora tropica CNB-440  Bacteria  normal  normal  0.184931 
 
 
-
 
NC_011831  Cagg_2382  acyl-CoA dehydrogenase domain protein  26.24 
 
 
389 aa  102  9e-21  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0656  acyl-CoA dehydrogenase domain-containing protein  25.14 
 
 
380 aa  102  1e-20  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2439  acyl-CoA dehydrogenase domain protein  26.59 
 
 
380 aa  102  1e-20  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008009  Acid345_2369  acyl-CoA dehydrogenase-like  26.57 
 
 
380 aa  102  1e-20  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4700  acyl-CoA dehydrogenase domain protein  27.98 
 
 
384 aa  102  1e-20  Conexibacter woesei DSM 14684  Bacteria  normal  0.201387  normal  0.86731 
 
 
-
 
NC_011830  Dhaf_2865  acyl-CoA dehydrogenase domain protein  27.25 
 
 
389 aa  102  1e-20  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5472  acyl-CoA dehydrogenase  25.75 
 
 
379 aa  101  2e-20  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK5041  acyl-CoA dehydrogenase  25.75 
 
 
379 aa  101  2e-20  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A5519  acyl-CoA dehydrogenase  25.75 
 
 
379 aa  101  2e-20  Bacillus cereus AH187  Bacteria  normal  0.814074  n/a   
 
 
-
 
NC_011725  BCB4264_A5464  acyl-CoA dehydrogenase  25.47 
 
 
379 aa  101  2e-20  Bacillus cereus B4264  Bacteria  unclonable  0.0000608426  n/a   
 
 
-
 
NC_013124  Afer_0732  acyl-CoA dehydrogenase domain protein  26.56 
 
 
379 aa  101  3e-20  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_2826  acyl-CoA dehydrogenase domain protein  26.33 
 
 
385 aa  101  3e-20  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_5025  butyryl-CoA dehydrogenase (short-chain acyl-CoA dehydrogenase)  25.89 
 
 
379 aa  100  4e-20  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5488  acyl-CoA dehydrogenase  25.2 
 
 
379 aa  100  6e-20  Bacillus cereus G9842  Bacteria  normal  0.270181  hitchhiker  1.62736e-22 
 
 
-
 
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