11 homologs were found in PanDaTox collection
for query gene RSc1614 on replicon NC_003295
Organism: Ralstonia solanacearum GMI1000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_003295  RSc1614  hypothetical protein  100 
 
 
104 aa  206  8e-53  Ralstonia solanacearum GMI1000  Bacteria  normal  0.696869  normal 
 
 
-
 
NC_010682  Rpic_1932  TM2 domain containing protein  79.81 
 
 
104 aa  172  9.999999999999999e-43  Ralstonia pickettii 12J  Bacteria  normal  0.533409  normal  0.0149218 
 
 
-
 
NC_012856  Rpic12D_1604  TM2 domain containing protein  77.88 
 
 
104 aa  170  6.999999999999999e-42  Ralstonia pickettii 12D  Bacteria  normal  0.10102  normal  0.345673 
 
 
-
 
NC_008048  Sala_1089  TM2  40.4 
 
 
117 aa  70.5  0.000000000007  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_53630  hypothetical protein  36.96 
 
 
111 aa  60.5  0.000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0142273  hitchhiker  0.000532666 
 
 
-
 
NC_009656  PSPA7_4699  hypothetical protein  38.46 
 
 
111 aa  59.3  0.00000002  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2261  TM2 domain-containing protein  35.58 
 
 
103 aa  48.1  0.00004  Paracoccus denitrificans PD1222  Bacteria  normal  0.46379  normal  0.197019 
 
 
-
 
NC_013440  Hoch_4937  TM2 domain containing protein  36.36 
 
 
194 aa  42.4  0.002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4964  TM2 domain-containing protein  34.07 
 
 
139 aa  41.2  0.005  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5091  hypothetical protein  34.07 
 
 
139 aa  40.8  0.006  Pseudomonas putida KT2440  Bacteria  normal  0.710135  normal 
 
 
-
 
NC_013205  Aaci_2084  TM2 domain containing protein  35.14 
 
 
76 aa  40.8  0.006  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
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