More than 300 homologs were found in PanDaTox collection
for query gene Pmen_2058 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_2058  binding-protein-dependent transport systems inner membrane component  100 
 
 
339 aa  672    Pseudomonas mendocina ymp  Bacteria  normal  0.391891  normal  0.494478 
 
 
-
 
NC_007005  Psyr_1756  binding-protein dependent transport system inner membrane protein  90.27 
 
 
339 aa  618  1e-176  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.974792  normal  0.046264 
 
 
-
 
NC_002947  PP_4149  binding-protein-dependent transport systems inner membrane component  89.09 
 
 
339 aa  615  1e-175  Pseudomonas putida KT2440  Bacteria  normal  0.0570261  normal 
 
 
-
 
NC_009512  Pput_1716  binding-protein-dependent transport systems inner membrane component  89.09 
 
 
339 aa  615  1e-175  Pseudomonas putida F1  Bacteria  normal  0.937938  normal 
 
 
-
 
NC_010322  PputGB1_3721  binding-protein-dependent transport systems inner membrane component  88.79 
 
 
339 aa  615  1e-175  Pseudomonas putida GB-1  Bacteria  normal  0.0100075  normal 
 
 
-
 
NC_004578  PSPTO_3719  ABC transporter, permease protein  89.38 
 
 
339 aa  613  9.999999999999999e-175  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_29670  oligopeptide ABC transporter, inner membrane permease component  88.5 
 
 
339 aa  613  9.999999999999999e-175  Azotobacter vinelandii DJ  Bacteria  normal  0.175174  n/a   
 
 
-
 
NC_010501  PputW619_3474  binding-protein-dependent transport systems inner membrane component  89.09 
 
 
339 aa  610  1e-173  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3488  ABC transporter permease  87.91 
 
 
339 aa  610  1e-173  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_2179  binding-protein dependent transport system inner membrane protein  88.2 
 
 
339 aa  604  9.999999999999999e-173  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.756494 
 
 
-
 
NC_008463  PA14_41150  putative permease of ABC transporter  87.02 
 
 
339 aa  602  1.0000000000000001e-171  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_1540  binding-protein-dependent transport systems inner membrane component  73.67 
 
 
340 aa  518  1e-146  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3075  binding-protein dependent transport system inner membrane protein  71.01 
 
 
340 aa  506  9.999999999999999e-143  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_2270  binding-protein-dependent transport systems inner membrane component  71.89 
 
 
357 aa  505  9.999999999999999e-143  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2904  binding-protein dependent transport system inner membrane protein  70.12 
 
 
341 aa  501  1e-141  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.00718406  normal  0.256251 
 
 
-
 
NC_007492  Pfl01_3118  binding-protein dependent transport system inner membrane protein  70.71 
 
 
340 aa  499  1e-140  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0246  binding-protein-dependent transport systems inner membrane component  70.03 
 
 
355 aa  496  1e-139  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0265  peptide ABC transporter, permease protein  68.34 
 
 
340 aa  491  9.999999999999999e-139  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0141  binding-protein dependent transport system inner membrane protein  68.93 
 
 
340 aa  493  9.999999999999999e-139  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3031  peptide ABC transporter, permease protein  70.41 
 
 
340 aa  483  1e-135  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00306924  n/a   
 
 
-
 
NC_013223  Dret_0178  binding-protein-dependent transport systems inner membrane component  69.03 
 
 
347 aa  479  1e-134  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0202572  normal 
 
 
-
 
NC_009456  VC0395_0533  putative peptide ABC transporter, permease protein  67.46 
 
 
352 aa  481  1e-134  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3743  binding-protein dependent transport system inner membrane protein  69.82 
 
 
340 aa  476  1e-133  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.379844  normal  0.98827 
 
 
-
 
NC_007963  Csal_1948  binding-protein-dependent transport systems inner membrane component  66.57 
 
 
368 aa  474  1e-133  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.0329294  n/a   
 
 
-
 
NC_009720  Xaut_2635  binding-protein-dependent transport systems inner membrane component  63.16 
 
 
402 aa  473  1e-132  Xanthobacter autotrophicus Py2  Bacteria  normal  0.291012  normal  0.892203 
 
 
-
 
CP001509  ECD_02109  predicted oligopeptide transporter subunit  65.68 
 
 
341 aa  466  9.999999999999999e-131  Escherichia coli BL21(DE3)  Bacteria  normal  0.501538  n/a   
 
 
-
 
CP001637  EcDH1_1478  binding-protein-dependent transport systems inner membrane component  65.68 
 
 
341 aa  465  9.999999999999999e-131  Escherichia coli DH1  Bacteria  normal  0.152575  n/a   
 
 
-
 
NC_010498  EcSMS35_2328  ABC transporter, permease protein  65.98 
 
 
341 aa  466  9.999999999999999e-131  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.0125701 
 
 
-
 
NC_009800  EcHS_A2317  ABC transporter, permease protein  65.68 
 
 
341 aa  466  9.999999999999999e-131  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02068  hypothetical protein  65.68 
 
 
341 aa  466  9.999999999999999e-131  Escherichia coli BL21  Bacteria  normal  0.543969  n/a   
 
 
-
 
NC_009801  EcE24377A_2477  ABC transporter, permease protein  65.68 
 
 
341 aa  466  9.999999999999999e-131  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3317  ABC transporter, permease protein  65.38 
 
 
341 aa  464  9.999999999999999e-131  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.655724  normal  0.274397 
 
 
-
 
NC_010468  EcolC_1468  binding-protein-dependent transport systems inner membrane component  65.68 
 
 
341 aa  466  9.999999999999999e-131  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.00000790283  normal  0.119666 
 
 
-
 
NC_013173  Dbac_1350  binding-protein-dependent transport systems inner membrane component  68.84 
 
 
338 aa  462  1e-129  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.504144  n/a   
 
 
-
 
NC_010658  SbBS512_E0779  ABC transporter, permease protein  65.38 
 
 
341 aa  463  1e-129  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0450  putative peptide transport system permease protein  64.39 
 
 
342 aa  460  9.999999999999999e-129  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.540872  n/a   
 
 
-
 
NC_008709  Ping_0291  ABC transporter binding protein inner membrane protein  65.49 
 
 
349 aa  455  1e-127  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3248  binding-protein-dependent transport systems inner membrane component  66.86 
 
 
341 aa  456  1e-127  Serratia proteamaculans 568  Bacteria  normal  normal  0.02975 
 
 
-
 
NC_011080  SNSL254_A2412  inner membrane ABC transporter permease protein YejE  63.61 
 
 
341 aa  452  1.0000000000000001e-126  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0468301 
 
 
-
 
NC_011205  SeD_A2569  inner membrane ABC transporter permease YejE  63.61 
 
 
341 aa  452  1.0000000000000001e-126  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.00189075 
 
 
-
 
NC_011094  SeSA_A2458  inner membrane ABC transporter permease YejE  63.61 
 
 
341 aa  452  1.0000000000000001e-126  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.424248  normal  0.739807 
 
 
-
 
NC_011083  SeHA_C2455  inner membrane ABC transporter permease YejE  63.61 
 
 
341 aa  452  1.0000000000000001e-126  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00000213093 
 
 
-
 
NC_011149  SeAg_B2367  inner membrane ABC transporter permease protein YejE  63.31 
 
 
341 aa  452  1.0000000000000001e-126  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0273884  n/a   
 
 
-
 
NC_008463  PA14_37850  putative permease of ABC transporter  69.14 
 
 
338 aa  449  1e-125  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000425453  normal  0.227586 
 
 
-
 
NC_012880  Dd703_2338  binding-protein-dependent transport systems inner membrane component  62.72 
 
 
341 aa  444  1.0000000000000001e-124  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0291  binding-protein dependent transport system inner membrane protein  62.15 
 
 
390 aa  445  1.0000000000000001e-124  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3168  binding-protein dependent transport system inner membrane protein  64.6 
 
 
346 aa  447  1.0000000000000001e-124  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1914  binding-protein-dependent transport systems inner membrane component  62.72 
 
 
341 aa  446  1.0000000000000001e-124  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0381  binding-protein-dependent transport systems inner membrane component  61.6 
 
 
390 aa  444  1.0000000000000001e-124  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1643  binding-protein-dependent transport systems inner membrane component  62.13 
 
 
341 aa  444  1.0000000000000001e-124  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3076  binding-protein-dependent transport systems inner membrane component  68.25 
 
 
338 aa  442  1e-123  Pseudomonas putida KT2440  Bacteria  normal  normal  0.588889 
 
 
-
 
NC_012912  Dd1591_2434  binding-protein-dependent transport systems inner membrane component  61.24 
 
 
341 aa  442  1e-123  Dickeya zeae Ech1591  Bacteria  normal  0.254964  n/a   
 
 
-
 
NC_008254  Meso_4081  binding-protein-dependent transport systems inner membrane component  63.16 
 
 
383 aa  444  1e-123  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4211  binding-protein-dependent transport systems inner membrane component  60.77 
 
 
392 aa  438  9.999999999999999e-123  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.2506  n/a   
 
 
-
 
NC_007778  RPB_1773  binding-protein-dependent transport systems inner membrane component  60.77 
 
 
392 aa  439  9.999999999999999e-123  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0307109 
 
 
-
 
NC_009512  Pput_2648  binding-protein-dependent transport systems inner membrane component  69.67 
 
 
338 aa  440  9.999999999999999e-123  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3532  binding-protein-dependent transport systems inner membrane component  60.77 
 
 
392 aa  439  9.999999999999999e-123  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.499236  normal 
 
 
-
 
NC_011666  Msil_3916  binding-protein-dependent transport systems inner membrane component  62.47 
 
 
385 aa  436  1e-121  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_010322  PputGB1_2790  binding-protein-dependent transport systems inner membrane component  67.86 
 
 
338 aa  435  1e-121  Pseudomonas putida GB-1  Bacteria  normal  0.207956  normal  0.0893102 
 
 
-
 
NC_009485  BBta_7052  oligopeptide ABC transporter membrane protein  61.56 
 
 
391 aa  435  1e-121  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4448  binding-protein-dependent transport systems inner membrane component  60.66 
 
 
382 aa  435  1e-121  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0007  ABC transporter, permease protein  61.22 
 
 
379 aa  433  1e-120  Brucella suis 1330  Bacteria  normal  0.295504  n/a   
 
 
-
 
NC_009667  Oant_0012  binding-protein-dependent transport systems inner membrane component  61.22 
 
 
379 aa  433  1e-120  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.124175  n/a   
 
 
-
 
NC_009436  Ent638_2775  binding-protein-dependent transport systems inner membrane component  62.13 
 
 
341 aa  434  1e-120  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009505  BOV_0007  ABC transporter, permease protein  60.94 
 
 
379 aa  430  1e-119  Brucella ovis ATCC 25840  Bacteria  hitchhiker  0.00710024  n/a   
 
 
-
 
NC_011894  Mnod_4147  binding-protein-dependent transport systems inner membrane component  62.05 
 
 
395 aa  429  1e-119  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_4411  binding-protein-dependent transport systems inner membrane component  61.5 
 
 
396 aa  426  1e-118  Methylobacterium sp. 4-46  Bacteria  normal  0.510963  normal  0.625739 
 
 
-
 
NC_010505  Mrad2831_4323  binding-protein-dependent transport systems inner membrane component  60.94 
 
 
406 aa  426  1e-118  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.357131  normal  0.0286724 
 
 
-
 
NC_007204  Psyc_1040  ABC peptide transporter, inner membrane subunit  59.17 
 
 
360 aa  422  1e-117  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.522587 
 
 
-
 
NC_009524  PsycPRwf_1409  binding-protein-dependent transport systems inner membrane component  59.76 
 
 
345 aa  423  1e-117  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.327353 
 
 
-
 
NC_011757  Mchl_2738  binding-protein-dependent transport systems inner membrane component  57.65 
 
 
400 aa  422  1e-117  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.337549  normal  0.225857 
 
 
-
 
NC_010172  Mext_2515  binding-protein-dependent transport systems inner membrane component  57.65 
 
 
400 aa  422  1e-117  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.044054 
 
 
-
 
NC_010501  PputW619_2715  binding-protein-dependent transport systems inner membrane component  68.45 
 
 
338 aa  423  1e-117  Pseudomonas putida W619  Bacteria  normal  0.161854  normal  0.0734205 
 
 
-
 
NC_007969  Pcryo_1430  binding-protein-dependent transport systems inner membrane component  58.28 
 
 
360 aa  418  1e-116  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.318387 
 
 
-
 
NC_008044  TM1040_2550  binding-protein-dependent transport systems inner membrane component  57.92 
 
 
368 aa  420  1e-116  Ruegeria sp. TM1040  Bacteria  normal  0.247928  normal  0.144081 
 
 
-
 
NC_009428  Rsph17025_0528  binding-protein-dependent transport systems inner membrane component  58.47 
 
 
368 aa  421  1e-116  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.358885  normal  0.209148 
 
 
-
 
NC_010725  Mpop_2443  binding-protein-dependent transport systems inner membrane component  57.65 
 
 
400 aa  419  1e-116  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_3364  binding-protein-dependent transport systems inner membrane component  60.94 
 
 
376 aa  415  9.999999999999999e-116  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0702  ABC peptide transporter, inner membrane subunit  57.38 
 
 
368 aa  414  9.999999999999999e-116  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.440512  n/a   
 
 
-
 
NC_010465  YPK_2788  binding-protein-dependent transport systems inner membrane component  63.42 
 
 
342 aa  415  9.999999999999999e-116  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.352071  n/a   
 
 
-
 
NC_010581  Bind_3360  binding-protein-dependent transport systems inner membrane component  60.39 
 
 
398 aa  417  9.999999999999999e-116  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.124488 
 
 
-
 
NC_007925  RPC_3726  binding-protein-dependent transport systems inner membrane component  60.72 
 
 
392 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_2713  ABC transporter, permease protein  63.42 
 
 
342 aa  415  9.999999999999999e-116  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1495  ABC transporter permease  63.42 
 
 
342 aa  415  9.999999999999999e-116  Yersinia pestis Angola  Bacteria  normal  0.733887  normal 
 
 
-
 
NC_009049  Rsph17029_2357  binding-protein-dependent transport systems inner membrane component  57.38 
 
 
368 aa  414  9.999999999999999e-116  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.559782  normal  0.0520062 
 
 
-
 
NC_009952  Dshi_0657  ABC peptide transporter  56.59 
 
 
392 aa  410  1e-113  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0595  binding-protein-dependent transport systems inner membrane component  66.57 
 
 
347 aa  409  1e-113  Halorhodospira halophila SL1  Bacteria  normal  0.753912  n/a   
 
 
-
 
NC_011989  Avi_0246  ABC transporter membrane spanning protein (peptide)  59.56 
 
 
378 aa  410  1e-113  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_4134  binding-protein-dependent transport systems inner membrane component  60.94 
 
 
382 aa  406  1.0000000000000001e-112  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1465  binding-protein-dependent transport systems inner membrane component  59.52 
 
 
343 aa  390  1e-107  Magnetococcus sp. MC-1  Bacteria  normal  0.120778  normal 
 
 
-
 
NC_008751  Dvul_0843  binding-protein-dependent transport systems inner membrane component  60.12 
 
 
343 aa  385  1e-106  Desulfovibrio vulgaris DP4  Bacteria  normal  0.562885  normal  0.0400765 
 
 
-
 
NC_009379  Pnuc_1235  binding-protein-dependent transport systems inner membrane component  57.27 
 
 
341 aa  382  1e-105  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3861  binding-protein-dependent transport systems inner membrane component  51.48 
 
 
439 aa  383  1e-105  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_1450  binding-protein-dependent transport systems inner membrane component  54.52 
 
 
371 aa  379  1e-104  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A2991  ABC transporter, inner membrane subunit  54.22 
 
 
371 aa  378  1e-104  Burkholderia xenovorans LB400  Bacteria  normal  0.400376  normal 
 
 
-
 
NC_010531  Pnec_1102  binding-protein-dependent transport systems inner membrane component  56.97 
 
 
341 aa  375  1e-103  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_1805  binding-protein-dependent transport systems inner membrane component  55.46 
 
 
368 aa  375  1e-103  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.145516 
 
 
-
 
NC_012856  Rpic12D_1110  binding-protein-dependent transport systems inner membrane component  55.82 
 
 
374 aa  371  1e-102  Ralstonia pickettii 12D  Bacteria  normal  normal  0.671417 
 
 
-
 
NC_010682  Rpic_1016  binding-protein-dependent transport systems inner membrane component  55.52 
 
 
374 aa  369  1e-101  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0696851 
 
 
-
 
NC_007510  Bcep18194_A4999  ABC transporter, inner membrane subunit  55.12 
 
 
370 aa  370  1e-101  Burkholderia sp. 383  Bacteria  normal  0.861367  normal  0.405129 
 
 
-
 
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