6 homologs were found in PanDaTox collection
for query gene PSPTO_1401 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_004578  PSPTO_1401  type III secretion protein HrpQ  100 
 
 		 330 aa  677    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_1214  type III secretion protein HrpQ  80 
 
 		 324 aa  548  1e-155  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.35063  normal  0.65254 
 
 
-
 
NC_009439  Pmen_0040  YscD/HrpQ family type III secretion apparatus protein  49.09 
 
 		 304 aa  291  1e-77  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012917  PC1_2207  type III secretion apparatus protein, YscD/HrpQ family  33.82 
 
 		 309 aa  184  2.0000000000000003e-45  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  1  n/a   
 
 
-
 
NC_012912  Dd1591_1890  type III secretion apparatus protein, YscD/HrpQ family  32.39 
 
 		 323 aa  163  4.0000000000000004e-39  Dickeya zeae Ech1591  Bacteria  normal  0.925496  n/a   
 
 
-
 
NC_008392  Bamb_5864  sctD; secretion-associated protein  31.31 
 
 		 346 aa  44.7  0.002  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  1 
 
 
-
 
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