| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1401 |
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| Symbol | hrpQ |
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| ID | 1183037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1538375 |
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| End bp | 1539367 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637392773 |
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| Product | type III secretion protein HrpQ |
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| Protein accession | NP_791228 |
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| Protein GI | 28868609 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGAAT TACGCGTACT GAACGGCCAG CACCAGGGCG CAGCACTGCC CCTGATCGGC
GAGCAGTGGT CGATCGGCTC TGCTCAACAG CAGGACCTGG CGCTGGACGA TTCTGGCGTG
GAAAGCCTGC ATTGCCGCCT GCAACGCCTG GACGACAGCT GGACCCTCAA CGCTGAAGAG
GGCGCGGTGT GCGATGAAGA GGGCCATTCA CAGGCCAGCG TGGACCTGAC GCTCAACACC
GCGTTCATGC TCGGTTCAGT GTGGTTGTGC GTCTCGCCAG CCGGCGATGA GTGGCCGTCG
GTTCCGGCCG TTATCCCCAA GCAGCCGCAG GCTGAGGCCG AACCTGCACG TCACGAAGCG
CCGCTGGAAA AGGTCAAGTC GCGCTCGCAA TTTCTCAACC GCACCACCGG GATAATCGCC
GGCTTGCTGG TAGGCGTGAT CGGCAGCGCC TGGAGCCTGA CACGCCCGGC AGCCATCGTG
CTCGACCAAG GCCCGGCGCA CATCGCCTCA GCCATGACAA CCGCGCCCGG CATGCCGAAC
GCTGCGCCCA AAACATCGCA ACCTGCAGCG AAACCCGCCG GCCCGGCGAC TGACAAGCGC
GTTCGCCTGG CCAGCATGGA AGCTGTGCGG CATCAGCTCA CTACCATGCT CAGCGACCGC
ATGCTGACTG ACGTCAGCGT GGCCGAAACG CCAGAGGGAT TGATGCTCAA TGGGCATCTC
AAGGAAGAGT CGCTGGTGGT CTATCAGCGC ATGCTGCAGC GTTTCAAGGA CCGTTATGAC
TCACCCGTGA CGGTGCTTGA TAACGTCGCC AGCGCGCGCA ATACCCTGCC GTTTGTTGTC
GTGCAGATCA TGACCGGGCC GCATGCGCAT CTGGTGACCG CCGACGGTCG CCGCATGTAT
GTGGGCGATG AAAAAGACGG CCTGCGCCTG ACCAAAATCG ACGATCAGCG TTTGCAGTTC
GATGGCGACC GACACATTGA GGTGACCTGG TGA
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| Protein sequence | MFELRVLNGQ HQGAALPLIG EQWSIGSAQQ QDLALDDSGV ESLHCRLQRL DDSWTLNAEE
GAVCDEEGHS QASVDLTLNT AFMLGSVWLC VSPAGDEWPS VPAVIPKQPQ AEAEPARHEA
PLEKVKSRSQ FLNRTTGIIA GLLVGVIGSA WSLTRPAAIV LDQGPAHIAS AMTTAPGMPN
AAPKTSQPAA KPAGPATDKR VRLASMEAVR HQLTTMLSDR MLTDVSVAET PEGLMLNGHL
KEESLVVYQR MLQRFKDRYD SPVTVLDNVA SARNTLPFVV VQIMTGPHAH LVTADGRRMY
VGDEKDGLRL TKIDDQRLQF DGDRHIEVTW
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