| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0040 |
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| Symbol | |
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| ID | 5106714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 39429 |
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| End bp | 40343 |
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| Gene Length | 915 bp |
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| Protein Length | 304 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640501256 |
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| Product | YscD/HrpQ family type III secretion apparatus protein |
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| Protein accession | YP_001185546 |
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| Protein GI | 146305081 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACGAAC TGAGGGTATT GACCGGCCTG CACAAGGGCG CCGCACTGCC ACTGATCGGT
GAGCAATGGC TCATCGGTGC CGAAGAGGGT CGTGATCTGG CGTTGCACGA TCCAGGGGTG
GAAACCCTTC ACTGCCGCTT GCAGCGGGCG GGCGACAGCT GGCAGTTGCT GGCCGAGGAA
GGGGCCGTGC TCGACGGGGA GGGACACTCC CATGCGTCGA TGGAAGTACT GCTTGATTGC
CCACTCGTGC TCGGCTCCGT CTGGGTGTAC CTGGCCGCCG CTGAGTCACC CTGGCCAACG
TTGCCGGCAC TCGTCGGTCA TCCCGGCGAA GACGGCGACA GCAAGGCCTC TGCGGAGGTC
GGGGAACGAG GCCGTGTGCG TCTGCTCAAT CGCGGCACCG GCATAGCGCT TGGCGTCTTG
CTGGGCGTCA TGGGCAGCGC CTGGAGCCTG AGTTGGCCGG TTGGCTCCGC TTCGGGACCT
GCGGCGGTGC CGACGAGCGA GCCTGCCGCG GTTAGCGATG GCCGCACCCT ATTGCAGAAG
GACGAGGCGG TGCGCGTGCT CAAGCAGATG CTGAGTGAAC GCCTGCTGAC GGCCGTCTCG
GTCGAGCCGA ATGAGCAAGG TGTGGCGCTC ATGGGCTCGC TGCAGGGCGA AGGCATGCTG
GTCTACGAAC GCATGCTGCA ACGTTTCGAG AAGGACTATG AAACGGATTT CGTGTTGCAG
GACCAGGTTT CAAGTGGTGC CGCAGGGCTG CCATTCGTGA TCGTGCAGAT CATTGCCGGC
CCGCGTGGGC ACCTGGTGAT GGAGGATGGC CGGCGCTTGC ATGTCGGCGA CAAGCTGGAC
GGCCTGCGCC TGGTACGCAT CGATAACGAG CGCATCCTGT TCGATGGTGT CCGCCGTTAT
GAGGTGGCCT GGTGA
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| Protein sequence | MYELRVLTGL HKGAALPLIG EQWLIGAEEG RDLALHDPGV ETLHCRLQRA GDSWQLLAEE
GAVLDGEGHS HASMEVLLDC PLVLGSVWVY LAAAESPWPT LPALVGHPGE DGDSKASAEV
GERGRVRLLN RGTGIALGVL LGVMGSAWSL SWPVGSASGP AAVPTSEPAA VSDGRTLLQK
DEAVRVLKQM LSERLLTAVS VEPNEQGVAL MGSLQGEGML VYERMLQRFE KDYETDFVLQ
DQVSSGAAGL PFVIVQIIAG PRGHLVMEDG RRLHVGDKLD GLRLVRIDNE RILFDGVRRY
EVAW
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