10 homologs were found in PanDaTox collection
for query gene Bamb_4080 on replicon NC_008391
Organism: Burkholderia ambifaria AMMD



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008391  Bamb_4080  hypothetical protein  100 
 
 		 87 aa  179  1e-44  Burkholderia ambifaria AMMD  Bacteria  normal  1  normal  0.890756 
 
 
-
 
NC_010552  BamMC406_4544  hypothetical protein  94.25 
 
 		 87 aa  147  6e-35  Burkholderia ambifaria MC40-6  Bacteria  normal  0.17605  normal  0.0941928 
 
 
-
 
NC_007511  Bcep18194_B1134  helix-turn-helix protein, CopG  96.55 
 
 		 58 aa  115  9.999999999999999e-26  Burkholderia sp. 383  Bacteria  normal  0.0919916  normal  0.382348 
 
 
-
 
NC_008061  Bcen_3681  helix-turn-helix protein, CopG  93.1 
 
 		 58 aa  113  8.999999999999998e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.442121  n/a   
 
 
-
 
NC_008543  Bcen2424_4686  helix-turn-helix protein, CopG  93.1 
 
 		 58 aa  113  8.999999999999998e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  1  normal  0.162122 
 
 
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NC_010515  Bcenmc03_5614  hypothetical protein  93.1 
 
 		 58 aa  113  8.999999999999998e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010086  Bmul_4007  helix-turn-helix protein, CopG  85.96 
 
 		 57 aa  102  2e-21  Burkholderia multivorans ATCC 17616  Bacteria  decreased coverage  0.00925339  normal  0.282406 
 
 
-
 
NC_009767  Rcas_3444  CopG/DNA-binding domain-containing protein  62.5 
 
 		 187 aa  57.4  0.00000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.430101  normal  0.0328627 
 
 
-
 
NC_012669  Bcav_2379  CopG domain protein DNA-binding domain protein  58.33 
 
 		 70 aa  55.1  0.0000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.952945  normal  0.033656 
 
 
-
 
NC_009523  RoseRS_1600  CopG/DNA-binding domain-containing protein  57.78 
 
 		 189 aa  53.1  0.000001  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  1 
 
 
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