14 homologs were found in PanDaTox collection
for query gene Avi_3447 on replicon NC_011989
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011989  Avi_3447  hypothetical protein  100 
 
 
134 aa  276  9e-74  Agrobacterium vitis S4  Bacteria  normal  0.101233  n/a   
 
 
-
 
NC_011369  Rleg2_3014  hypothetical protein  90.29 
 
 
135 aa  202  2e-51  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3265  hypothetical protein  74.24 
 
 
135 aa  198  1.9999999999999998e-50  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.210422 
 
 
-
 
NC_009636  Smed_2334  hypothetical protein  70.77 
 
 
141 aa  187  2.9999999999999997e-47  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1054  hypothetical protein  34.96 
 
 
443 aa  83.2  0.000000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3705  hypothetical protein  34.95 
 
 
417 aa  68.6  0.00000000003  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011758  Mchl_5510  hypothetical protein  34.95 
 
 
417 aa  68.6  0.00000000003  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3646  hypothetical protein  35.87 
 
 
414 aa  65.5  0.0000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0628456 
 
 
-
 
NC_007952  Bxe_B1194  hypothetical protein  33.33 
 
 
450 aa  64.3  0.0000000005  Burkholderia xenovorans LB400  Bacteria  normal  0.255912  normal 
 
 
-
 
NC_009253  Dred_2722  hypothetical protein  35.87 
 
 
301 aa  61.6  0.000000004  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.000000050933  n/a   
 
 
-
 
NC_007511  Bcep18194_B2793  hypothetical protein  30.08 
 
 
448 aa  57.8  0.00000005  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_1912  hypothetical protein  33.33 
 
 
149 aa  56.6  0.0000001  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.0000000247527  n/a   
 
 
-
 
NC_007614  Nmul_A2395  hypothetical protein  28.43 
 
 
300 aa  49.7  0.00001  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.511829  n/a   
 
 
-
 
NC_013216  Dtox_1661  hypothetical protein  28 
 
 
132 aa  48.9  0.00002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00606542 
 
 
-
 
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