26 homologs were found in PanDaTox collection
for query gene YPK_3117 on replicon NC_010465
Organism: Yersinia pseudotuberculosis YPIII



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010465  YPK_3117  DNA circulation family protein  100 
 
 
468 aa  952    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2815  DNA circulation family protein  67.02 
 
 
468 aa  650    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1469  putative DNA circulation protein  66.81 
 
 
468 aa  648    Yersinia pestis Angola  Bacteria  normal  normal  0.539442 
 
 
-
 
NC_009708  YpsIP31758_2737  putative DNA circulation protein  67.24 
 
 
468 aa  652    Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007951  Bxe_A3051  putative bacteriophage DNA circulation protein, Mu-like  35.97 
 
 
475 aa  233  6e-60  Burkholderia xenovorans LB400  Bacteria  normal  0.273853  hitchhiker  0.000025391 
 
 
-
 
NC_010622  Bphy_1874  DNA circulation family protein  34.62 
 
 
490 aa  206  6e-52  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.0000000000818097 
 
 
-
 
NC_011205  SeD_A2255  tail/DNA circulation protein  46.04 
 
 
446 aa  119  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.000334711 
 
 
-
 
NC_011094  SeSA_A4477  tail/DNA circulation protein  46.04 
 
 
446 aa  119  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  hitchhiker  0.00305287 
 
 
-
 
NC_011094  SeSA_A2252  tail/DNA circulation protein  46.04 
 
 
446 aa  119  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.257831 
 
 
-
 
NC_007948  Bpro_3737  DNA circulation-like  43.15 
 
 
415 aa  111  4.0000000000000004e-23  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A2088  hypothetical protein  45.53 
 
 
128 aa  107  4e-22  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2588  DNA circulation family protein  37.24 
 
 
438 aa  103  9e-21  Enterobacter sp. 638  Bacteria  normal  normal  0.0328137 
 
 
-
 
NC_007005  Psyr_4591  DNA circulation, N-terminal  25.65 
 
 
470 aa  102  1e-20  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.422243  normal 
 
 
-
 
NC_002947  PP_3864  phage FluMu DNA circulation protein, putative  33.18 
 
 
420 aa  99  2e-19  Pseudomonas putida KT2440  Bacteria  normal  normal  0.891467 
 
 
-
 
NC_007492  Pfl01_1158  DNA circulation-like  38.1 
 
 
411 aa  78.6  0.0000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0581  DNA circulation protein, putative  39 
 
 
607 aa  75.5  0.000000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.519076  n/a   
 
 
-
 
NC_010465  YPK_0189  DNA circulation family protein  32.54 
 
 
439 aa  72.4  0.00000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4486  Mu-like prophage DNA circulation protein-like protein  34.38 
 
 
428 aa  71.6  0.00000000003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.126188  normal  0.0913206 
 
 
-
 
NC_011769  DvMF_0744  DNA circulation family protein  33.33 
 
 
446 aa  70.5  0.00000000006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009436  Ent638_1654  DNA circulation family protein  48.44 
 
 
153 aa  65.9  0.000000002  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0745  DNA circulation protein  36 
 
 
439 aa  60.5  0.00000007  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0692  DNA circulation protein  36 
 
 
439 aa  60.5  0.00000007  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2698  prophage MuSo2, DNA circulation protein, putative  30.23 
 
 
438 aa  55.1  0.000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_6587  putative Mu-like prophage DNA circulation protein  37.18 
 
 
422 aa  47.4  0.0006  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2449  putative Mu-like prophage DNA circulation protein  31.54 
 
 
159 aa  44.7  0.004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_0557  hypothetical protein  23.53 
 
 
259 aa  43.5  0.008  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.0323374  hitchhiker  0.0000871603 
 
 
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