24 homologs were found in PanDaTox collection
for query gene YPK_0189 on replicon NC_010465
Organism: Yersinia pseudotuberculosis YPIII



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010465  YPK_0189  DNA circulation family protein  100 
 
 
439 aa  904    Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0744  DNA circulation family protein  31.37 
 
 
446 aa  214  1.9999999999999998e-54  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_002947  PP_3864  phage FluMu DNA circulation protein, putative  25.91 
 
 
420 aa  86.7  8e-16  Pseudomonas putida KT2440  Bacteria  normal  normal  0.891467 
 
 
-
 
NC_011205  SeD_A2255  tail/DNA circulation protein  33.61 
 
 
446 aa  85.1  0.000000000000003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  hitchhiker  0.000334711 
 
 
-
 
NC_011094  SeSA_A4477  tail/DNA circulation protein  33.61 
 
 
446 aa  85.1  0.000000000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  hitchhiker  0.00305287 
 
 
-
 
NC_011094  SeSA_A2252  tail/DNA circulation protein  33.61 
 
 
446 aa  85.1  0.000000000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.257831 
 
 
-
 
NC_009436  Ent638_2588  DNA circulation family protein  33.09 
 
 
438 aa  75.1  0.000000000002  Enterobacter sp. 638  Bacteria  normal  normal  0.0328137 
 
 
-
 
NC_010465  YPK_3117  DNA circulation family protein  32.54 
 
 
468 aa  72.4  0.00000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0581  DNA circulation protein, putative  30.63 
 
 
607 aa  72  0.00000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.519076  n/a   
 
 
-
 
NC_007005  Psyr_4591  DNA circulation, N-terminal  28.12 
 
 
470 aa  71.6  0.00000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.422243  normal 
 
 
-
 
NC_007948  Bpro_3737  DNA circulation-like  28.81 
 
 
415 aa  69.7  0.0000000001  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1158  DNA circulation-like  27.38 
 
 
411 aa  66.6  0.0000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_2737  putative DNA circulation protein  32.29 
 
 
468 aa  65.5  0.000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2815  DNA circulation family protein  32.29 
 
 
468 aa  65.5  0.000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1469  putative DNA circulation protein  32.29 
 
 
468 aa  65.1  0.000000002  Yersinia pestis Angola  Bacteria  normal  normal  0.539442 
 
 
-
 
NC_004347  SO_2698  prophage MuSo2, DNA circulation protein, putative  31.45 
 
 
438 aa  64.7  0.000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007951  Bxe_A3051  putative bacteriophage DNA circulation protein, Mu-like  26.24 
 
 
475 aa  63.2  0.00000001  Burkholderia xenovorans LB400  Bacteria  normal  0.273853  hitchhiker  0.000025391 
 
 
-
 
NC_009457  VC0395_A0745  DNA circulation protein  37.08 
 
 
439 aa  59.3  0.0000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0692  DNA circulation protein  37.08 
 
 
439 aa  59.3  0.0000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2449  putative Mu-like prophage DNA circulation protein  31.4 
 
 
159 aa  57  0.0000007  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6587  putative Mu-like prophage DNA circulation protein  27.5 
 
 
422 aa  52  0.00002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_4486  Mu-like prophage DNA circulation protein-like protein  26.5 
 
 
428 aa  51.6  0.00003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.126188  normal  0.0913206 
 
 
-
 
NC_009436  Ent638_1654  DNA circulation family protein  34.78 
 
 
153 aa  47  0.0007  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1874  DNA circulation family protein  23.49 
 
 
490 aa  45.1  0.003  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.0000000000818097 
 
 
-
 
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