15 homologs were found in PanDaTox collection
for query gene Smed_3879 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009620  Smed_3879  hypothetical protein  100 
 
 
354 aa  732    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2549  hypothetical protein  25.45 
 
 
383 aa  111  2.0000000000000002e-23  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1786  hypothetical protein  34.17 
 
 
298 aa  110  4.0000000000000004e-23  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_0298  hypothetical protein  27.76 
 
 
367 aa  99.4  9e-20  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3682  hypothetical protein  24.32 
 
 
366 aa  97.4  3e-19  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00939506  n/a   
 
 
-
 
NC_010468  EcolC_1607  hypothetical protein  26.47 
 
 
367 aa  92.8  7e-18  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.634641 
 
 
-
 
NC_009637  MmarC7_1362  hypothetical protein  24.92 
 
 
390 aa  80.9  0.00000000000003  Methanococcus maripaludis C7  Archaea  normal  0.0609018  hitchhiker  0.00000046022 
 
 
-
 
NC_009714  CHAB381_0960  putative WfaX  24.68 
 
 
348 aa  76.6  0.0000000000006  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1409  hypothetical protein  25.54 
 
 
376 aa  72.4  0.00000000001  Shewanella loihica PV-4  Bacteria  normal  0.872031  hitchhiker  0.0084702 
 
 
-
 
NC_010655  Amuc_2095  hypothetical protein  23.99 
 
 
394 aa  66.2  0.0000000008  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0060  hypothetical protein  22.81 
 
 
368 aa  54.3  0.000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.272206 
 
 
-
 
NC_008740  Maqu_2618  hypothetical protein  25.37 
 
 
358 aa  53.9  0.000005  Marinobacter aquaeolei VT8  Bacteria  normal  0.568711  n/a   
 
 
-
 
NC_009430  Rsph17025_4002  hypothetical protein  26.19 
 
 
867 aa  52  0.00001  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_0140  coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein  21.33 
 
 
867 aa  49.7  0.00008  Brachyspira murdochii DSM 12563  Bacteria  unclonable  7.0838e-16  n/a   
 
 
-
 
NC_013530  Xcel_2894  hypothetical protein  24.64 
 
 
329 aa  45.4  0.001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
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