14 homologs were found in PanDaTox collection
for query gene Nham_1421 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_1421  hypothetical protein  100 
 
 
70 aa  140  5e-33  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1176  hypothetical protein  81.43 
 
 
70 aa  119  9.999999999999999e-27  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.829742  normal 
 
 
-
 
NC_007958  RPD_1985  hypothetical protein  70.15 
 
 
65 aa  91.3  4e-18  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.767846  normal  0.505926 
 
 
-
 
NC_007925  RPC_1819  hypothetical protein  75 
 
 
75 aa  86.7  1e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.286234  normal  0.33037 
 
 
-
 
NC_011004  Rpal_2111  hypothetical protein  65.57 
 
 
67 aa  82.4  0.000000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  hitchhiker  0.00358078  n/a   
 
 
-
 
NC_007778  RPB_3463  hypothetical protein  62.3 
 
 
67 aa  80.1  0.00000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0791609  normal 
 
 
-
 
NC_009720  Xaut_3163  hypothetical protein  66.67 
 
 
69 aa  79.7  0.00000000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  0.0298135  normal  0.0124686 
 
 
-
 
NC_009428  Rsph17025_1084  hypothetical protein  45.9 
 
 
66 aa  48.9  0.00002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.0473834 
 
 
-
 
NC_009719  Plav_0914  hypothetical protein  54.24 
 
 
64 aa  48.9  0.00002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.86852 
 
 
-
 
NC_011989  Avi_1347  gene transfer agent (GTA) orfg10  48.15 
 
 
62 aa  47.8  0.00005  Agrobacterium vitis S4  Bacteria  decreased coverage  0.000217924  n/a   
 
 
-
 
NC_010725  Mpop_1419  hypothetical protein  42.42 
 
 
80 aa  43.9  0.0008  Methylobacterium populi BJ001  Bacteria  normal  0.518955  normal  0.0974788 
 
 
-
 
NC_007493  RSP_2474  hypothetical protein  44 
 
 
172 aa  41.2  0.005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0542451  n/a   
 
 
-
 
NC_011757  Mchl_1697  hypothetical protein  43.1 
 
 
76 aa  40.8  0.007  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.11211  normal  0.300589 
 
 
-
 
NC_010172  Mext_1423  hypothetical protein  43.1 
 
 
76 aa  40.4  0.008  Methylobacterium extorquens PA1  Bacteria  normal  0.0592329  normal  0.148289 
 
 
-
 
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