10 homologs were found in PanDaTox collection
for query gene PP_0439 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_0439  hypothetical protein  100 
 
 
154 aa  311  2e-84  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.000459183  unclonable  2.25098e-07 
 
 
-
 
NC_009512  Pput_0472  hypothetical protein  97.16 
 
 
141 aa  253  4e-67  Pseudomonas putida F1  Bacteria  hitchhiker  0.000830985  normal  0.0146685 
 
 
-
 
NC_010322  PputGB1_0469  hypothetical protein  95.04 
 
 
141 aa  244  2e-64  Pseudomonas putida GB-1  Bacteria  normal  0.101572  normal 
 
 
-
 
NC_010501  PputW619_4764  hypothetical protein  85.82 
 
 
141 aa  228  2e-59  Pseudomonas putida W619  Bacteria  hitchhiker  2.55391e-05  normal 
 
 
-
 
NC_007005  Psyr_4562  hypothetical protein  53.52 
 
 
142 aa  129  2e-29  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00149977  normal  0.65254 
 
 
-
 
NC_004578  PSPTO_0612  hypothetical protein  51.41 
 
 
142 aa  125  2e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.653535  n/a   
 
 
-
 
NC_007492  Pfl01_5094  hypothetical protein  51.7 
 
 
146 aa  124  3e-28  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  1.48168e-11  normal 
 
 
-
 
NC_008463  PA14_08640  hypothetical protein  46.55 
 
 
234 aa  89.4  2e-17  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000854998  hitchhiker  0.000197864 
 
 
-
 
NC_009656  PSPA7_0818  hypothetical protein  44.23 
 
 
234 aa  87.8  4e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  0.349242  n/a   
 
 
-
 
NC_009439  Pmen_3924  sporulation domain-containing protein  51.58 
 
 
225 aa  85.1  3e-16  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
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