12 homologs were found in PanDaTox collection
for query gene PSPTO_0612 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_0612  hypothetical protein  100 
 
 
142 aa  293  8e-79  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.653535  n/a   
 
 
-
 
NC_007005  Psyr_4562  hypothetical protein  83.1 
 
 
142 aa  235  2e-61  Pseudomonas syringae pv. syringae B728a  Bacteria  hitchhiker  0.00149977  normal  0.65254 
 
 
-
 
NC_007492  Pfl01_5094  hypothetical protein  51.02 
 
 
146 aa  130  3.9999999999999996e-30  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.0000000000148168  normal 
 
 
-
 
NC_010322  PputGB1_0469  hypothetical protein  51.41 
 
 
141 aa  123  8.000000000000001e-28  Pseudomonas putida GB-1  Bacteria  normal  0.101572  normal 
 
 
-
 
NC_009512  Pput_0472  hypothetical protein  51.41 
 
 
141 aa  121  3e-27  Pseudomonas putida F1  Bacteria  hitchhiker  0.000830985  normal  0.0146685 
 
 
-
 
NC_002947  PP_0439  hypothetical protein  51.41 
 
 
154 aa  119  9.999999999999999e-27  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.000459183  unclonable  0.000000225098 
 
 
-
 
NC_010501  PputW619_4764  hypothetical protein  50.7 
 
 
141 aa  119  9.999999999999999e-27  Pseudomonas putida W619  Bacteria  hitchhiker  0.0000255391  normal 
 
 
-
 
NC_009439  Pmen_3924  sporulation domain-containing protein  50 
 
 
225 aa  109  1.0000000000000001e-23  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0818  hypothetical protein  41.09 
 
 
234 aa  97.8  4e-20  Pseudomonas aeruginosa PA7  Bacteria  normal  0.349242  n/a   
 
 
-
 
NC_008463  PA14_08640  hypothetical protein  41.09 
 
 
234 aa  97.1  7e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000854998  hitchhiker  0.000197864 
 
 
-
 
NC_007912  Sde_0917  hypothetical protein  32.5 
 
 
223 aa  45.4  0.0002  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00000000260853  hitchhiker  0.00000167824 
 
 
-
 
NC_012560  Avin_06070  hypothetical protein  27.93 
 
 
144 aa  45.4  0.0003  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
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