41 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mlut_00850  CDS  NC_012803  89693  90253  561  hypothetical protein  YP_002956204  decreased coverage  0.00463032  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_03700  CDS  NC_012803  401336  401632  297  hypothetical protein  YP_002956472  decreased coverage  0.00236427  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_03710  CDS  NC_012803  401658  402500  843  hypothetical protein  YP_002956473  decreased coverage  0.0079589  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_03720  CDS  NC_012803  402550  403308  759  phosphoglycerate mutase  YP_002956474  decreased coverage  0.00729363  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_05130  CDS  NC_012803  560753  561526  774  Undecaprenyl pyrophosphate synthetase  YP_002956607  decreased coverage  0.00991473  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_05590  CDS  NC_012803  610704  611393  690  deoxyribose-phosphate aldolase  YP_002956651  decreased coverage  0.00397833  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_06490  CDS  NC_012803  707173  709077  1905  type IV secretory pathway, VirD4 component  YP_002956737  decreased coverage  0.00928914  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_06770  CDS  NC_012803  732144  732701  558  ribosome recycling factor  YP_002956763  decreased coverage  0.000531316  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_06780  CDS  NC_012803  732727  733563  837  CDP-diglyceride synthetase  YP_002956764  decreased coverage  0.000170794  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_07990  CDS  NC_012803  862704  863900  1197  molybdopterin/thiamine biosynthesis dinucleotide-utilizing protein  YP_002956882  decreased coverage  0.000402237  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_08740  CDS  NC_012803  943706  945160  1455  3-isopropylmalate dehydratase, large subunit  YP_002956951  decreased coverage  0.000460564  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_08750  CDS  NC_012803  945164  945769  606  3-isopropylmalate dehydratase, small subunit  YP_002956952  decreased coverage  0.00132575  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_09070  CDS  NC_012803  983195  984082  888  ABC-type polysaccharide/polyol phosphate export systems, permease component  YP_002956983  decreased coverage  0.00126145  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_10450  CDS  NC_012803  1126801  1127253  453  protein of unknown function (DUF1931)  YP_002957111  decreased coverage  5.01711e-05  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_10660  CDS  NC_012803  1145085  1148783  3699  DNA-directed DNA polymerase III PolC  YP_002957132  decreased coverage  7.22079e-05  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_11540  CDS  NC_012803  1243829  1245427  1599  ATPase component of ABC transporters with duplicated ATPase domain  YP_002957214  decreased coverage  0.00577413  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_11720  CDS  NC_012803  1263453  1264796  1344  acetyl-CoA acetyltransferase  YP_002957232  decreased coverage  0.000631784  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_11850  CDS  NC_012803  1278045  1279109  1065  tRNA (adenine-58-N(1)-) methyltransferase  YP_002957244  decreased coverage  0.00898867  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_12400  CDS  NC_012803  1338315  1339595  1281  coproporphyrinogen III oxidase, anaerobic  YP_002957299  decreased coverage  0.00807664  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_12410  CDS  NC_012803  1339596  1341455  1860  GTP-binding protein LepA  YP_002957300  decreased coverage  0.00127751  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_12480  CDS  NC_012803  1348429  1350936  2508  leucyl-tRNA synthetase  YP_002957307  decreased coverage  0.0064243  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_12740  CDS  NC_012803  1380197  1383013  2817  hypothetical protein  YP_002957333  decreased coverage  0.00274818  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_12840  CDS  NC_012803  1394081  1396360  2280  (p)ppGpp synthetase, RelA/SpoT family  YP_002957343  decreased coverage  0.00420725  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_12960  CDS  NC_012803  1408139  1409389  1251  ribonuclease D  YP_002957355  decreased coverage  0.00837058  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_12970  CDS  NC_012803  1409466  1411637  2172  3-hydroxyacyl-CoA dehydrogenase  YP_002957356  decreased coverage  0.000263022  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_13070  CDS  NC_012803  1423575  1424276  702  K+ transport system, NAD-binding component  YP_002957366  decreased coverage  0.00265603  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_13280  CDS  NC_012803  1451594  1453087  1494  RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family  YP_002957387  decreased coverage  0.00389203  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_13290  CDS  NC_012803  1453323  1454381  1059  hypothetical protein  YP_002957388  decreased coverage  0.00147583  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_14280  rRNA  NC_012803  1559578  1562670  3093  23S ribosomal RNA    decreased coverage  0.0043021  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_14320  CDS  NC_012803  1568191  1570467  2277  DNA/RNA helicase, superfamily I  YP_002957481  decreased coverage  0.00598075  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_14330  CDS  NC_012803  1570646  1572106  1461  argininosuccinate lyase  YP_002957482  decreased coverage  0.00125191  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_15290  CDS  NC_012803  1678971  1679831  861  predicted metal-dependent phosphoesterase, PHP family  YP_002957575  decreased coverage  0.00297509  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_15440  CDS  NC_012803  1693421  1694101  681  amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family  YP_002957590  decreased coverage  0.00886274  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_15630  CDS  NC_012803  1715970  1716509  540  predicted membrane protein  YP_002957609  decreased coverage  0.00366593  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_15640  CDS  NC_012803  1716639  1717157  519  ferritin-like protein  YP_002957610  decreased coverage  0.00614251  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_16410  CDS  NC_012803  1790227  1791147  921  hypothetical protein  YP_002957683  decreased coverage  0.000426456  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_17010  CDS  NC_012803  1850117  1850491  375  LSU ribosomal protein L18P  YP_002957742  decreased coverage  8.38424e-12  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_17020  CDS  NC_012803  1850491  1851024  534  LSU ribosomal protein L6P  YP_002957743  decreased coverage  3.13624e-11  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_18120  CDS  NC_012803  1960038  1961078  1041  transposase family protein  YP_002957849  decreased coverage  0.0064535  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_18810  CDS  NC_012803  2031715  2033574  1860  chaperone protein DnaK  YP_002957918  decreased coverage  0.000228841  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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Mlut_18820  CDS  NC_012803  2033899  2034549  651  DNA-binding ferritin-like protein (oxidative damage protectant)  YP_002957919  decreased coverage  0.000855963  n/a    Micrococcus luteus NCTC 2665  Bacteria 
 
 
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