38 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
BURPS668_0564  CDS  NC_009074  535904  536404  501  phosphopantetheine adenylyltransferase  YP_001057617  decreased coverage  0.00247535  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_0570  tRNA  NC_009074  540563  540639  77  tRNA-Gln    decreased coverage  0.000532927  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_0571  CDS  NC_009074  540693  541574  882  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase  YP_001057623  decreased coverage  0.000369391  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_0768  CDS  NC_009074  746007  747455  1449  cytochrome c family protein  YP_001057820  decreased coverage  0.00254  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_0769  CDS  NC_009074  747446  748087  642  hypothetical protein  YP_001057821  decreased coverage  0.00282822  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_0986  CDS  NC_009074  964528  965244  717  hydrophobic amino acid ABC transporter ATP-binding protein  YP_001058037  decreased coverage  3.50992e-08  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_1025  CDS  NC_009074  998546  999007  462  hypothetical protein  YP_001058075  decreased coverage  0.000631398  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_1634  CDS  NC_009074  1600747  1600986  240  hypothetical protein  YP_001058675  decreased coverage  0.0078809  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_1742  CDS  NC_009074  1717576  1718484  909  tRNA pseudouridine synthase B  YP_001058781  decreased coverage  0.00438072  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_1777  CDS  NC_009074  1754688  1755401  714  hypothetical protein  YP_001058816  decreased coverage  1.95228e-09  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_1908  CDS  NC_009074  1869896  1871503  1608  carbohydrate ABC transporter ATP-binding protein  YP_001058943  decreased coverage  0.00738158  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_2321  CDS  NC_009074  2299775  2302192  2418  ATP-dependent protease La  YP_001059354  decreased coverage  0.00784653  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_2802  CDS  NC_009074  2766102  2769368  3267  ribonuclease E  YP_001059823  decreased coverage  3.61809e-05  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_2803  CDS  NC_009074  2769487  2770620  1134  molybdenum cofactor biosynthesis protein A  YP_001059824  decreased coverage  0.000449435  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_2814  CDS  NC_009074  2780033  2780356  324  ferredoxin  YP_001059835  decreased coverage  8.1194e-12  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_2816  tRNA  NC_009074  2780630  2780705  76  tRNA-Asn    decreased coverage  2.13443e-12  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_2983  CDS  NC_009074  2928809  2929228  420  hypothetical protein  YP_001059997  decreased coverage  0.00581443  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_3054  CDS  NC_009074  2997692  3000337  2646  hypothetical protein  YP_001060067  decreased coverage  0.00156029  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_3167  CDS  NC_009074  3107013  3107993  981  LysR family transcriptional regulator  YP_001060179  decreased coverage  5.29291e-10  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_3379  CDS  NC_009074  3313079  3313243  165  hypothetical protein  YP_001060390  decreased coverage  1.27924e-11  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_3640  CDS  NC_009074  3565501  3566286  786  hypothetical protein  YP_001060645  decreased coverage  0.00234142  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_3699  CDS  NC_009074  3622034  3623113  1080  3-dehydroquinate synthase  YP_001060703  decreased coverage  0.00532697  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_3762  CDS  NC_009074  3677670  3678860  1191  elongation factor Tu  YP_001060765  decreased coverage  1.63409e-10  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_3914  CDS  NC_009074  3812591  3812890  300  hypothetical protein  YP_001060908  decreased coverage  6.13286e-08  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A0033  CDS  NC_009075  23433  24437  1005  helix-hairpin-helix DNA-binding motif-containing protein  YP_001061039  decreased coverage  1.19331e-08  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A0586  CDS  NC_009075  552678  553625  948  ABC-type sulfate transport system, permease component  YP_001061591  decreased coverage  1.33683e-05  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A0810  CDS  NC_009075  785854  786753  900  rhamnosyltransferase I, subunit A  YP_001061809  decreased coverage  4.08122e-11  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A0946  CDS  NC_009075  925409  925672  264  hypothetical protein  YP_001061945  decreased coverage  1.69892e-13  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A0947  CDS  NC_009075  925906  926925  1020  lyase  YP_001061946  decreased coverage  1.29184e-11  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A1392  CDS  NC_009075  1302720  1304321  1602  ABC transporter, periplasmic substrate-binding protein  YP_001062389  decreased coverage  0.00928392  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A1475  CDS  NC_009075  1371852  1373165  1314  malonyl CoA-acyl carrier protein transacylase  YP_001062471  decreased coverage  0.00398178  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A1922  CDS  NC_009075  1868448  1868594  147  hypothetical protein  YP_001062917  decreased coverage  2.01982e-06  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A2370  CDS  NC_009075  2301392  2301739  348  gp53  YP_001063364  decreased coverage  2.74486e-10  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A2371  CDS  NC_009075  2301788  2302009  222  hypothetical protein  YP_001063365  decreased coverage  1.79431e-10  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A2462  CDS  NC_009075  2377657  2380380  2724  2-oxoacid dehydrogenase subunit E1  YP_001063456  decreased coverage  3.85423e-07  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A2486  CDS  NC_009075  2405882  2405998  117  hypothetical protein  YP_001063480  decreased coverage  0.00595469  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A2489  CDS  NC_009075  2406634  2406948  315  hypothetical protein  YP_001063483  decreased coverage  0.00503707  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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BURPS668_A2640  CDS  NC_009075  2537256  2537840  585  putative lipoprotein  YP_001063633  decreased coverage  0.00196399  n/a    Burkholderia pseudomallei 668  Bacteria 
 
 
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