12 homologs were found in PanDaTox collection
for query gene PP_1286 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_1286  type IV pilus assembly PilZ  100 
 
 
388 aa  791    Pseudomonas putida KT2440  Bacteria  normal  0.14494  normal 
 
 
-
 
NC_009512  Pput_4439  type IV pilus assembly PilZ  99.23 
 
 
388 aa  787    Pseudomonas putida F1  Bacteria  normal  0.176977  normal  0.491709 
 
 
-
 
NC_010322  PputGB1_4563  type IV pilus assembly PilZ  96.91 
 
 
388 aa  749    Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0887  type IV pilus assembly PilZ  90.46 
 
 
388 aa  727    Pseudomonas putida W619  Bacteria  normal  0.114345  normal 
 
 
-
 
NC_007492  Pfl01_0958  alginate biosynthesis protein Alg44  69.92 
 
 
389 aa  568  1e-161  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.441091  normal 
 
 
-
 
NC_007005  Psyr_1061  alginate biosynthesis protein Alg44  68.46 
 
 
390 aa  562  1.0000000000000001e-159  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0248075  normal  0.728065 
 
 
-
 
NC_004578  PSPTO_1241  alginate biosynthesis protein Alg44  66.92 
 
 
390 aa  559  1e-158  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_10950  alginate biosynthesis protein Alg44  57.95 
 
 
388 aa  454  1.0000000000000001e-126  Azotobacter vinelandii DJ  Bacteria  decreased coverage  0.00119266  n/a   
 
 
-
 
NC_009439  Pmen_1029  type IV pilus assembly PilZ  55.93 
 
 
387 aa  446  1.0000000000000001e-124  Pseudomonas mendocina ymp  Bacteria  normal  0.434326  normal 
 
 
-
 
NC_008463  PA14_18550  alginate biosynthesis protein Alg44  55.84 
 
 
389 aa  432  1e-120  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.048678  normal  0.478475 
 
 
-
 
NC_009656  PSPA7_1603  alginate biosynthesis protein Alg44  56.1 
 
 
389 aa  434  1e-120  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1675  type IV pilus assembly PilZ  27.34 
 
 
381 aa  154  2.9999999999999998e-36  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
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