| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CA2559_12508 |
|---|
| Symbol | |
|---|
| ID | 9297991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Croceibacter atlanticus HTCC2559 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014230 |
|---|
| Strand | - |
|---|
| Start bp | 2711550 |
|---|
| End bp | 2713388 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | |
|---|
| Product | putative TonB-dependent outer membrane receptor |
|---|
| Protein accession | YP_003717243 |
|---|
| Protein GI | 298209064 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGATTT TTTCTACAAA TGCACACTCG CAATTGGATA GCCTCCAACA ATTGCCTGAG
GTTATCATTA GTGATGTAAG CTTGACAGAT TTTTCTACTG GTACTACAAC CACAACATTA
AGAGATAGTG TTTTTTACAA TCAAGCAACA CCTTTACAGC AAATTTTACT ATATAACAGT
TTAATATATT TTAAGGAAAA TGGTCCTGGT GGTGTGTCTT CTCCATCATT TAGAGGAACA
AATGCCTCTC AAACTGCTGT GCTGTGGAAT GGTATTTCAA TAAATTCTCA GTTAAATGGG
CAAACCGATT TTAATACCAT AAGTACTCGA AACTATGATA ATCTTGTAGT AAGACATGGT
GGCGGAAGCA TTCCTTACGG CAGTGGAGCT GTTGGTGGTA GTATACATTT AAATAACACC
ACTAAATACA ACACTGGTTT TAAAACAAAA TTGTTAGAAA GCTACGGAAG CTTTGAAACC
TATGAAGCCC AAGCTAAATT AAGTTATGGT ACTAAAAAGT TTTATATAGA AACGGCATTA
GATGGTTTGC AAAGTGAAAA CGATTTTAAA TATTTAAATA CTAACCTTAG GAATGATAAT
GGTGCTTATA AAACTATAAA TGGAAATTTA AATTTTGGAT TTAAATTGAA TAAGGACCAT
CAATTAAATG TTTATCATAA TACATTTTTA AGTGATAGAG AATTTAGTAG AACACTAACG
GCTGTTACTT TTGATGGTTA TGAAGATGAA AATACAAGAA CCCTATTAGC TTGGACAGCA
AAAGGAAAAG CATTTGAAAG TGTAACCAGG TTAGCTCATG TCTTTGAGTC TTATAAATAC
TTTCCAGACA AAAATGTAGA CGATTTTTAT TTTTATGGGA AAGCGATTAG GTATGTTTTT
AACAACGAGT TTAAATATCA ATTTAATACT AAGACAAGTT TAAAAACTAT TGCAGACCTT
AATACTACAA GTGCAGAAGG ATCTAACATA GAAGAAAGTA ATAGAGATGT AATTTCTGGC
GCTGCATTGT TAGAGCATAA GTTGAGTAAA TTTATTACTG GTACACTTCA ACTAAAACAG
GAGTTTTCTA ATGATTATGA AAGCCCATTG TTATATGGTA TTTCTGCAGA CTATCTTTCG
GCTTTTCAAA AGGATAACAC TATTCGCCAA TTTGGTATTG GCTTTAATGC ATCCAAAAAT
TTTAGAGCAC CAACGTTTAA CGACTTAAAT TGGAACGGTG CCGGCGCTAT CGGAAATCCA
GATTTATTGC CAGAAATAAC ATATCAAGGA GAACTAAACC AAACATTAAA ATTTTCTTTC
GGAACATTTA AGCTAGCTGA ATTTATTAGT TACTCAGAAA ATTTGATTCA ATGGTTACCC
AACCAACAAG GGTTGTTTAT GCCTAACAAT ATTAAGGATT CTAGAAACTA CGGTATAGAG
GCGCAATTTC AGGCTTATTA TAATTTTGGC TCACATAAGT TTACTACTAC AACAGGTTAC
ACGTATGTTG AGGCCAAAGA TTTATCAACC AATGCACAAT TTATATATGT GCCTAAACAT
AAATTTATTG GAAGTTTAGG TTACAACTAT AAATCATTAC ACCTTCTGTA TCAGTTTTTA
TACAATGGTG AGGTCTTTAC AAAGACAGAC AATTCTGAAA CTCTTGGAGG TTATGCAGTA
TCTAATGTTA ACCTTTCATT TAAGCCAAAA TCTAAAGGAT TAAACTGGTT TACAATACAA
TTATCTGTAA ATAATATCTT CAATAAAAAT TATCAAAATA TAGCGTTTAG GCCAAATCCT
GGACGCCACT ATTCAATTTT ACTAACTCAA TCCTTCTAA
|
|---|
| Protein sequence | MWIFSTNAHS QLDSLQQLPE VIISDVSLTD FSTGTTTTTL RDSVFYNQAT PLQQILLYNS
LIYFKENGPG GVSSPSFRGT NASQTAVLWN GISINSQLNG QTDFNTISTR NYDNLVVRHG
GGSIPYGSGA VGGSIHLNNT TKYNTGFKTK LLESYGSFET YEAQAKLSYG TKKFYIETAL
DGLQSENDFK YLNTNLRNDN GAYKTINGNL NFGFKLNKDH QLNVYHNTFL SDREFSRTLT
AVTFDGYEDE NTRTLLAWTA KGKAFESVTR LAHVFESYKY FPDKNVDDFY FYGKAIRYVF
NNEFKYQFNT KTSLKTIADL NTTSAEGSNI EESNRDVISG AALLEHKLSK FITGTLQLKQ
EFSNDYESPL LYGISADYLS AFQKDNTIRQ FGIGFNASKN FRAPTFNDLN WNGAGAIGNP
DLLPEITYQG ELNQTLKFSF GTFKLAEFIS YSENLIQWLP NQQGLFMPNN IKDSRNYGIE
AQFQAYYNFG SHKFTTTTGY TYVEAKDLST NAQFIYVPKH KFIGSLGYNY KSLHLLYQFL
YNGEVFTKTD NSETLGGYAV SNVNLSFKPK SKGLNWFTIQ LSVNNIFNKN YQNIAFRPNP
GRHYSILLTQ SF
|
|---|
| |