| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_5534 |
|---|
| Symbol | |
|---|
| ID | 9249437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014211 |
|---|
| Strand | + |
|---|
| Start bp | 725990 |
|---|
| End bp | 728251 |
|---|
| Gene Length | 2262 bp |
|---|
| Protein Length | 753 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | |
|---|
| Product | transglutaminase domain protein |
|---|
| Protein accession | YP_003683419 |
|---|
| Protein GI | 297564446 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0283272 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTCACGC TGACACCGCC ACCCCGCGCC GAGGAGGCTC CGGTCGCTCC CGCGCCGCCG
GACCCGCCCC CGGAGGGCAT CCCCGTTGCC GCGGGGCTGG TCATGGCCGC CGCCGCGGGC
GGTATCGCCG TCGCCCCCGG ATACGCCGAC CCCGCCCCGG TCCACGTCCT GCTACCCGCC
TGCGCCCTGC TCAGCGTCGT GGTGACCCTG CTGCTGCGGC GCCGGACGAG CGCGCTCCGT
ACCGCCCTGG CCGGGCTGCC GCTCCCGCTG GCGGTGGTGG CGGCGTGCTC GGTGTGGGTG
CCCGGAGAGG GGACCGGGGT GCTCGGCTCC ACCGTGGAGG CGGTCCTGCA CTCGGGGGCG
CGGATCCTCA CCAGCGCCGC GCCGACCCCG CTGAACGCGG ACACCCTCGC CCTGCCGGTA
CTGGCCACCT GGCTGACCGG CGCCGCCTCC GCTCTGGCCT GGCGCGGACG CCGCCGGGCG
CTCGCCCTGC TGCCGGGGCT GCTGCTGCTC GTCGGCGCGG TCGTGCTCAA CGGTCCCGTC
GCCCCGCCCG GCTTCCCCGC CATCGGACTG CTCACGGTGT CCTCGGTCAT CCTCATGTCC
GCGTCCCGGG AGGAGCACGA CCGCGGCGCC CCGGCGGGCC GGACGGCGCT GAGCGTCGAG
GTCGACACCC CCGGCGGCAC CCCGCCGGGA AGACCGCGCC GGGTACTGGT GACCGGGGTC
ATCGCCGTGC TGACCGCCAC GGCCACCGTG TACGGCGGAC CCGTCCTGCT CGCCGGATGG
GACGCGGAGC CGGGCGACCC CCGCACGGTC GTGAGCCCGC CGATGGACCC CCAGGCGGCG
CTCAACCCGC TCGTCTACCT GTCCGGCTGG GCCGCCGACC CCGACGAGCC GCTGCTCACC
GTCGCCGCCG ACGAACCCGT CAGCCTGCGC TGGGTCACCC TCTCCGACTT CACCGGCACC
ACCTGGCTGC CCGAGGGCGG CTACCGGGCG GCGGGTCAGG AGCTTCCCGA GCCCGTGCCG
CCCCTGCCCC ACGCCACCGG GGTCAGCGCC GAGATCACCG TCGGGGAGGA CCTGCCCGGC
AGCTGGGCCC CGGTCGTCGG CGCCCCCCGG CGGATCGGCC TTCCCTCCCC GGGCTACAGC
GCGCTCTCGG GAACCGTGGT GAACATGGAC GGCGCCGTCG CGGGCGCCCG GTACCAGGTC
ACCGGCGACG TCGCCGACTG GCGTCCGGGC GAGCTGGCCG GGGCCTCCAC GCCCGCGGAC
GAGATCTTCG ACCGCTACCG CGAACTGCCC GCCGGGGCGC CGTCCGTGCT CAACGACGTC
GTCGCCGCGG TCGCCAGCGA GGGTTCCCCG TACCAGCGCG CCAGCGCCCT GGCGGAGTAT
CTGAGGCGGT CGCACCGGTT CGACCCCGAG ACCCCCGGCG GCCACGGCTA CGCCAACGTC
GCCGCGGTCC TCGCCCCGCC CGGGGCGGAG GGGGGCGCGG GCACCTCCGA GCAGTTCGCG
AGCGCCTTCG CCATGCTGGC CCGCGCGGCC GGACTGCCCA GCCGCGTGGC CGTCGGCTTC
GGGGCGGGCA CGGAGGACGC CGGCGGTACC CGCACCGTCC GCACGGGCGA CGCCGTGGCC
TGGGGCGAGG TCTACTTCGA CGGCGTCGGA TGGGTGCCGT TCGCCGTCAC CCCCGGGGAG
GAGGGCGGGG ACGACGCGAG CGGGTCCGCG CGGAGCGAGC GGACCCCGGA GGGAGCCGAT
TCCGCGCAGG ACCAGGTCCT GCCCGAGGAC GACGCCCACG ACGTCGCCGC GCCCCGGCGC
GAGCCGGAGC GGTTTCCGGT GTGGGGGGTG CCCGCTATCG CGGGCGGTCT GCTCGCCGCC
GTGCTCGCCG TCCCCGCGCT GCGCCTGGCC CGCAGCGGGC GGCGGCTGCG CGCGGGCACG
CCCGAGCGCC GCGTCCTGGG CGCGTGGCAC GAGCTGCGCG ACGGCCTGCG CCTGTGCGCG
TCGGAGCCGC CGCCGGGGCA CACGGTCAGC GACACCGTCG CGCTCGCCCG GAGCCTGCTG
CCCGAGACCG CCCAGGCCTG GGCCCACGTG GACCTGGGCA GGCTGGGCCG CACGGTCAAC
GGGATCGGGT TCGCCGCGGG GCCGGGCGTC ACCGGGGAGC AGGCGGCCTC CATCGCCGAG
GGCGTGCGCC GCCAGCTGCG CGCGCTGCGT CTCAGCAGGT CCCGTACCAG GAGGCTCACC
TGGTGGTTCG ACCCCCGTCC GCTGCTGTGG CGGGAGCGGT GA
|
|---|
| Protein sequence | MVTLTPPPRA EEAPVAPAPP DPPPEGIPVA AGLVMAAAAG GIAVAPGYAD PAPVHVLLPA
CALLSVVVTL LLRRRTSALR TALAGLPLPL AVVAACSVWV PGEGTGVLGS TVEAVLHSGA
RILTSAAPTP LNADTLALPV LATWLTGAAS ALAWRGRRRA LALLPGLLLL VGAVVLNGPV
APPGFPAIGL LTVSSVILMS ASREEHDRGA PAGRTALSVE VDTPGGTPPG RPRRVLVTGV
IAVLTATATV YGGPVLLAGW DAEPGDPRTV VSPPMDPQAA LNPLVYLSGW AADPDEPLLT
VAADEPVSLR WVTLSDFTGT TWLPEGGYRA AGQELPEPVP PLPHATGVSA EITVGEDLPG
SWAPVVGAPR RIGLPSPGYS ALSGTVVNMD GAVAGARYQV TGDVADWRPG ELAGASTPAD
EIFDRYRELP AGAPSVLNDV VAAVASEGSP YQRASALAEY LRRSHRFDPE TPGGHGYANV
AAVLAPPGAE GGAGTSEQFA SAFAMLARAA GLPSRVAVGF GAGTEDAGGT RTVRTGDAVA
WGEVYFDGVG WVPFAVTPGE EGGDDASGSA RSERTPEGAD SAQDQVLPED DAHDVAAPRR
EPERFPVWGV PAIAGGLLAA VLAVPALRLA RSGRRLRAGT PERRVLGAWH ELRDGLRLCA
SEPPPGHTVS DTVALARSLL PETAQAWAHV DLGRLGRTVN GIGFAAGPGV TGEQAASIAE
GVRRQLRALR LSRSRTRRLT WWFDPRPLLW RER
|
|---|
| |