| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_4196 |
|---|
| Symbol | |
|---|
| ID | 9248070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | + |
|---|
| Start bp | 5010647 |
|---|
| End bp | 5012389 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | |
|---|
| Product | ABC transporter transmembrane region |
|---|
| Protein accession | YP_003682095 |
|---|
| Protein GI | 297563121 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00643785 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGGACAC TTCCCCAGCC CACCGGCGTT CCCGAACGCC GTTCGGCCGA CCGGTTCCTG
TGGTGGCTCG CCCGGAAGGA GTGCCGCTCA CTGCTGTGGG CCGGGACCAC CACGGGCGCC
TTCATGCTCA CCGGCGTGCT CATCTCCGCC GCGCTCGGCG CCGCCCTCGA CTCCGGGGTC
ACCCGAGGCG ACCCGGACGC CCTCCTCGGC TGGTTCGGCG TCCTCAGCGC CCTCGTCGCG
GTCTCCGTCG CACTCGTCCC CCTCTCCCAC CGGGCCGACT GCTTCAGCTG GTACGCGTCC
GCCTACCGCA CGATCCAGGT GGTCACCAAC CATTCCGTGC GCATGGGCCC CACGCTCACC
CGGCGTCTGC CCTCCGGCGA GGTGGTGGCC GTGGGCACCG AGGACATCGA CCGCGTCGGC
GACTTCTACG AGACGGTGGG CCAGCTCCTG GCCGTCTTCG TGACGGTGGC CGCGGTCAGC
GCCCTCATGC TCACCTCGCA CGTCGCCTTC GGCGTCATCG TCCTGGTGTC GGTCCCGCTC
ATCATGGCGG GGATGGTCCC CCTGCTGAAC CTGTTCTCCC GCCGCCAGGA GCACCAGCGC
GACCGGCAGG CCGAACTCAC CACCCTGGCC ACCGACCTGG TCGCGGGCCT GCGCGTGCTC
CGGGGCGTGG GCGGCGAGCG CACCGTGGAC CACCGCTACC GCACCGCCTC CCAGGGGGTC
CGCTCCGCCG CCATGCGCGT GGGCTGGGTG GACGCCGCCC TCAACGCCGT GCGCGAGCTC
CTCCCGGGCC TCCTCCTCGT GGGCATCGTC TGGTACGGCG CGCGCCTGGC CCTGACCGGG
GAGATCACCG TCGGCCAGCT CGTCGCGTTC TACGGCTACG CCGGAACGCT CTCCATGGCC
GTGCGCCACC TGATGCGTTC CCTGTCCATG TACGTCTCGG CCCGGGTGGC CGCCGGTCGC
GTGGTGCGCG TGCTGCGCCT GGAGCACGAC CACCCCGACC CCGAGCGCCC CGAGCCGGAA
CCGGCCGGCC CCTGCGACCT GCACGACCCG GGCAGCGGAG TGACCCTCGC CGCGCACCGC
ACCACCGGCG TGGTCTGCGC CGACCCCGCC GACGCCACCG CCATCACCGA ACGCCTGGGG
CGCTACCGGG ACGAGGAGGG CGCGCACGCC GCACTGGTCG AGACGGCCAC GGGCCGGACC
GTGCGCCTGC GCGACCTGCC CCGGTCCCGG GTGCGCCGCC GCGTCCTGGT GGCCGCCAAC
GACGCGCATC TGTTCTCCGG AACCCTGCGC GGTGAACTGT CCCCGGACCA GGGGATCTCC
GACGAACGCC TGGCCGAGGT CGTGCGCGCC GCGCACGCCG ACGACGTGGT GCGCCAGTCC
GCCGCCGGAC TGGACGCGCT GCTGACCGAG CGCGGCCGCG AGTACTCCGG CGGCCAGCAG
CAGCGCCTGC GCCTGGCCCG CGCCCTGGCC CTGGAGCCGG AGATCCTGAT CCTGGTGGAG
CCCGCCTCCG CCGTGGACGC CCACTCCGAG GCCGCGATCG CCGCCGGGCT GCCCGCCGAG
CGGGCGGGGC GCACGACCGG CCTGGTCACC ACCAGCCCCC TGCTGCTCGA CCACACCGAC
CACGTGCAGT TCGTCGAGGA GGGCCGCCTC ACGGCCGAGG GGACCCACCG CGCCCTCCTC
GCCGAGTGCC CGAACTACGC CGCCACCGTC CTGCGCGCCG TTCCCACGGA GGGGAAGCCA
TGA
|
|---|
| Protein sequence | MRTLPQPTGV PERRSADRFL WWLARKECRS LLWAGTTTGA FMLTGVLISA ALGAALDSGV
TRGDPDALLG WFGVLSALVA VSVALVPLSH RADCFSWYAS AYRTIQVVTN HSVRMGPTLT
RRLPSGEVVA VGTEDIDRVG DFYETVGQLL AVFVTVAAVS ALMLTSHVAF GVIVLVSVPL
IMAGMVPLLN LFSRRQEHQR DRQAELTTLA TDLVAGLRVL RGVGGERTVD HRYRTASQGV
RSAAMRVGWV DAALNAVREL LPGLLLVGIV WYGARLALTG EITVGQLVAF YGYAGTLSMA
VRHLMRSLSM YVSARVAAGR VVRVLRLEHD HPDPERPEPE PAGPCDLHDP GSGVTLAAHR
TTGVVCADPA DATAITERLG RYRDEEGAHA ALVETATGRT VRLRDLPRSR VRRRVLVAAN
DAHLFSGTLR GELSPDQGIS DERLAEVVRA AHADDVVRQS AAGLDALLTE RGREYSGGQQ
QRLRLARALA LEPEILILVE PASAVDAHSE AAIAAGLPAE RAGRTTGLVT TSPLLLDHTD
HVQFVEEGRL TAEGTHRALL AECPNYAATV LRAVPTEGKP
|
|---|
| |