| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_3899 |
|---|
| Symbol | |
|---|
| ID | 9247770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | - |
|---|
| Start bp | 4671167 |
|---|
| End bp | 4672231 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_003681802 |
|---|
| Protein GI | 297562828 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0558004 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGACC TGACCTCGGA CGCCGCGGCC CTGACCGCCG CCCTCGTGGA CATCCGATCC
GAGAGCGGCG ACGAGAAGGT CCTCGCCGAC GCGGTCGAGG GCGCCCTGTC GGCCCTGCCC
CACCTGCGCG TCAGCCGCGA CGGCGACGCC GTCGTCGCCC GCACCGACCT GGGCCGCCCC
CGCCGCGTCG TCATCGCCGG GCACATCGAC ACCGTCCCCA TCGTGGACAA CGTGCCCTCC
CGCGTCGTCG GCGACCGCCT CTACGGGTGC GGCACCTCGG ACATGAAGGC CGGTGTCGCC
GTCCAGCTCA GGCTGGCCGC CCTGGTCGCC GAGCCGGTGC ACGACGTCAC CTACGTCTTC
TACGACAACG AGGAGGTCGA CGCCTCCCGC AACGGCCTGC TCCGCCTGGC CCGCAACCAC
CCCGAGTGGC TGGCGGGGGA CTTCGCGGTC CTCATGGAGC CCACCGACGG CGTCATCGAG
GGGGGCTGCC AGGGCACCAT GCGCGTGGAG GTCACCACCC GGGGCAAGCG CGCCCACAGC
GCCCGCTCCT GGATGGGCGT GAACGCCATC CACGGCGCCG GAGCCGTCCT GGACGTCCTG
CGCGCCTACA CCCCGCGCGA ACCCGAGGTG GAGGGGCTGC GCTTCCACGA GGGCCTCAAC
GCCGTGGCCA TCGAGGGCGG GGTCGCGGGC AACGTCATCC CCGACGAGTG CGTGGTCCGG
GTCAACTACC GCTTCGCCCC CGACCTGTCC GTCGCCGACG CCGAGGCGCA CCTGCGCGAG
GTCTTCGACG GGTTCGAGCT CGCCGTGGTC GACGCCGCCG CCCCCGCCCG GCCCGGGCTG
GACAAGCCCT CGGCAGCGGC GTTCGTCACC GCGGTGGGGG AGGGCAGCGC CCGCGCCAAG
CTCGGCTGGA CCGACGTCTC CCGCTTCTCC GAGCTGGGCG TGCCCGCCGT CAACTACGGC
CCCGGCGACC CGACGCTCGC CCACACCAAG GACGAGTACG CCGAGATCCC CCGCATCCAC
GAGGCCGAGG AGCGCATGGT CGCCTGGTTG TCGGGCGCCC GCTGA
|
|---|
| Protein sequence | MLDLTSDAAA LTAALVDIRS ESGDEKVLAD AVEGALSALP HLRVSRDGDA VVARTDLGRP
RRVVIAGHID TVPIVDNVPS RVVGDRLYGC GTSDMKAGVA VQLRLAALVA EPVHDVTYVF
YDNEEVDASR NGLLRLARNH PEWLAGDFAV LMEPTDGVIE GGCQGTMRVE VTTRGKRAHS
ARSWMGVNAI HGAGAVLDVL RAYTPREPEV EGLRFHEGLN AVAIEGGVAG NVIPDECVVR
VNYRFAPDLS VADAEAHLRE VFDGFELAVV DAAAPARPGL DKPSAAAFVT AVGEGSARAK
LGWTDVSRFS ELGVPAVNYG PGDPTLAHTK DEYAEIPRIH EAEERMVAWL SGAR
|
|---|
| |