| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_3661 |
|---|
| Symbol | |
|---|
| ID | 9247530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | - |
|---|
| Start bp | 4392461 |
|---|
| End bp | 4395568 |
|---|
| Gene Length | 3108 bp |
|---|
| Protein Length | 1035 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 79% |
|---|
| IMG OID | |
|---|
| Product | Superfamily I DNA and RNA helicase and helicase subunits |
|---|
| Protein accession | YP_003681565 |
|---|
| Protein GI | 297562591 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.517036 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGGTCAC TGCGGGACGA CGAGGACGAG GTCGGGCACG CGGGCGTGCC GGGGGCGCCG
CCGGGAGTCA CCGGCCCCCT CCCCGGCGCG CTCGGCGGCC CGTCGGGAGT CGGCACGGCC
TCGCTGCGCT GGAAGCCCCC GATCGACCGT TCCGAGGTGA GCTCCCTGCT GGCCTACCTG
CGCGCCTGCA TGCGCCGCGA GGCGGTGCAC ACCCACGTCG TCCCGGTCGG CGACCTGGGC
TCCGACAGCT GCGCGTGCCT GCCCCCGGGC CCGGAGGTGC TCTTCAGCGG GGCCGGGGAG
ACGCTTGCGC TGCGCCCGGA GTCCGTCCGC GTCCTGCGCG CGGCCAACGA CCTCGGCCAG
TCCGCGCGCT ACGGCTACCC GCTCGTGGTC CTGGGGGAGG GCGGGGACCG GGCGGCCCTG
CCCCTGCTCA CCGTCGACGT GCGCGTCGTG GACGAGACCG CGGACACCCC CGCCGGGGCC
GGGGACACCC TGGTCCGCGC GGTCGGCCCG CCCGACGTCA ACCCCGCGCT CCTGGAACGC
CTCGGCCTCA CCGACCCCGA GGACCTGTTC GAACTCCGGA CCCGGCTGCG CTCCGGGGCG
CCCGACCCCC TGCGGCGCCC CGCGGCCGTC GCCGACCTCG CCGCCAGGAT CCGCCTCCTG
CTCGCCGGCC TGGAGATCGA GCGGGTGGAC GACATCGCGC CCCTGGGCAC CCGCGGCGCC
CCGCGCACCT GGATGGACGG CGCCCACAAC GTCGCCGTGC TCTTCCGGGC CGGGCCCGGG
GGACGCCACG ACGCCGACGA GCGCGAACCC GTCGGCGTCG AGGGCGTCCT GGCCGACCTC
GACCCCTCCG GCCGCGACGG CCTCGACCCC GAGGACGTCA GCGGGACCGC CCTGGAGGCC
CTGCTCGGAC AGCCCTCCCG AACGGCCGCG GCCTCCGGCC CGGCGGCGTC CGGACGGCTC
TTCCGCTGCT CCCGCGCCGC GAACCGCCGC GGTTGCGCCG ACCCCGGCGG GGACACCGCC
GAGCCCCCCG TCCCGATCTC GGCGACCGCC CTCGACCAGT CCCAGTACGC GGTCCTGTGC
GCGGCCATGC GTGAGCAGCT CACCGTGGCC GCGGCCCCGC CCGGGAGCGG GGTGCACGAC
CTGGTCGACG CCCTCGTGCG CACCGCCGTC AGCAACGGCC AGCGCGTCCT GGTGTGCGGT
CGCACCGAGG CCGACGTCGC CGCGGTGCGC CTGCGCGCGG ACGCCTCCCC CGGGCACCCC
GTCGTGCGCG TGGGCGGGGA GGGACGGCGC ACGGCCGAGG CCGTGCTGCT CACCCGGCTC
CTCACCGAGC ACTCCCGGAG CCTGCCCGCG GCCCCCGCCG GTTCCGGCGG GGAGGACCCC
ACCGTCCACT GGGCGGACCT GGCCGCGGAC TGGACGGCGG TCCGCGAGGC GTGGCGGGCC
ATGGACACCA TGGCCTCCGG CGGCCACGCG CTCGCCCGCC TGGCCGAGGA ACGCGGCCGG
GTCGTCGCCC AGGGGTGGGA CCCCGACTCC CTCTTCACCC CGGAGCGGGG CGGCCCCGAG
TACTGGCTGC ACCGGGCCGA GCGCGCGGCG GCCGGGGGCC TGGCCGGGCT GGCGCACCGG
GGCGCCGTCC GCCGCGAACT GGGCGTGGAC ACCGACCCCG ACAGCCTCGC CCGCCTGCGC
GCGGTCGCCC GTCTGGAGGG CGAGTGGCGC GCGGCCGTGG ACCGGCGGAT CCGCTGCGCG
CCGCTGAACG CGCTCACCGC CGACCTGGCC GACGCCCTCG CCCGGCACCG CAGGTCCAGC
TCCGCCTGCC TGCGCGCGGT CGGCGACCCC CGGCTGTGGC GGGGACGCGC CGCCATCGAG
CACCGCCTGG AGAGCCTCAA CTGGCACCGC GGCCACGGCT GGCCGGGCCC GGGCGCGCTG
TTCGACACCC TGCCCGCGTG GGTGTGCCGC ACCGACCAGG TCCGGGCGCT GCAACCCCGG
GCGGGCCTGT TCGACCTGGC CGTCGTGGTC GGGGCCGAGC GCACCCGGCT GGCCGAACTG
CTGCCGGTGC TCTACCGCGC CAACCGCGCC GTGGTGTTCG GCGACCCCGC GCACCCGGGA
CCGGTGAGCG TGCTGGAACC GGACGAGGAG CGCCGCGCGC TGGCCGCCGC GGGTCTGGTC
GCGGGCCAGT TGGACGACCG GGGCCTGCGC TACGGCGGCG GTTCGGCGAT GCGCGCCCTG
TACCGGGCGG CGCCGCCCAT GCGGTGGCTG GACGAGCACG ACGGGGCGCC GCCCCAGCTC
GCCGGGGCCG CGTCGCGGCA CTGCTACGGG GGCAGGCTCG CGGTGCGCAC CCTCCCCGAC
CCCTCGGGCG GCCCCGCGTT CGAGTGGCGC GACGTCGCCG GGGTCTGCGA GGCCGCGCCC
GGGGCGTCCT TCGTCAACCG GGACGAGGCC TACCGGGTGG CGGTGGTGGT GGACGAACTC
GACGAGCACC TGCCCCGGGG CCGGGTGGTC GCGGTGGTCG CGCCGACCCA GCCCCAGGCG
GCCCTGGTGC GCCGCCTGCT GAGCAAGCGC GTCCTGCGCC ACGAGGTGCG GGTGGGCGGA
CCGGACCTGT TGGCGGACGA CCACGATCCG GCGGACGTCA CCGTCCTGAC GCCGACGCTG
GCCTCCGGGG CGCCCGCCGT CGCCGAGCGG CGTGTGCGCC GGATGGGTCA CCTGTGGTCG
TCGGTGCTCA CCCGCACCCG CCAGCGGCTC GTGGTGGTGG GCGACCGCGG GTACTGGTCG
GGCGACGACG GCCCGCTGGG CGAGCTGGAG GCGTCGGCGG CCGGGGGCCA CGCGGGGCGG
ACCGACGCGG CGGCCTCCGC GCTGGTCAGG GAGCTGCGCG GGGTGGGGAC GGAGGTGACC
CTCCAGCAGA CGGGCGAGGG CTGGACCGCC GACATGGTGG TCCGGTTCGG CTCCCGCCGC
CTGCTGCTCC TGCTCGACCG GGAGCCCGAC GGCCGCTCCC TGCGCTGGCT GCTCGCCCGG
GGGGAGACGC TCAACCGCAC CACGGGGGAC CCCGTGGTCG TGGTGCCCGC CTGGCGCTGC
CTGGCCGACC CGCGCGCCCT GGTGGAGGAG ATCCTCACCG CCCACTGA
|
|---|
| Protein sequence | MRSLRDDEDE VGHAGVPGAP PGVTGPLPGA LGGPSGVGTA SLRWKPPIDR SEVSSLLAYL
RACMRREAVH THVVPVGDLG SDSCACLPPG PEVLFSGAGE TLALRPESVR VLRAANDLGQ
SARYGYPLVV LGEGGDRAAL PLLTVDVRVV DETADTPAGA GDTLVRAVGP PDVNPALLER
LGLTDPEDLF ELRTRLRSGA PDPLRRPAAV ADLAARIRLL LAGLEIERVD DIAPLGTRGA
PRTWMDGAHN VAVLFRAGPG GRHDADEREP VGVEGVLADL DPSGRDGLDP EDVSGTALEA
LLGQPSRTAA ASGPAASGRL FRCSRAANRR GCADPGGDTA EPPVPISATA LDQSQYAVLC
AAMREQLTVA AAPPGSGVHD LVDALVRTAV SNGQRVLVCG RTEADVAAVR LRADASPGHP
VVRVGGEGRR TAEAVLLTRL LTEHSRSLPA APAGSGGEDP TVHWADLAAD WTAVREAWRA
MDTMASGGHA LARLAEERGR VVAQGWDPDS LFTPERGGPE YWLHRAERAA AGGLAGLAHR
GAVRRELGVD TDPDSLARLR AVARLEGEWR AAVDRRIRCA PLNALTADLA DALARHRRSS
SACLRAVGDP RLWRGRAAIE HRLESLNWHR GHGWPGPGAL FDTLPAWVCR TDQVRALQPR
AGLFDLAVVV GAERTRLAEL LPVLYRANRA VVFGDPAHPG PVSVLEPDEE RRALAAAGLV
AGQLDDRGLR YGGGSAMRAL YRAAPPMRWL DEHDGAPPQL AGAASRHCYG GRLAVRTLPD
PSGGPAFEWR DVAGVCEAAP GASFVNRDEA YRVAVVVDEL DEHLPRGRVV AVVAPTQPQA
ALVRRLLSKR VLRHEVRVGG PDLLADDHDP ADVTVLTPTL ASGAPAVAER RVRRMGHLWS
SVLTRTRQRL VVVGDRGYWS GDDGPLGELE ASAAGGHAGR TDAAASALVR ELRGVGTEVT
LQQTGEGWTA DMVVRFGSRR LLLLLDREPD GRSLRWLLAR GETLNRTTGD PVVVVPAWRC
LADPRALVEE ILTAH
|
|---|
| |