| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_2557 |
|---|
| Symbol | |
|---|
| ID | 9246408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | - |
|---|
| Start bp | 3048307 |
|---|
| End bp | 3049515 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | |
|---|
| Product | ABC transporter related protein |
|---|
| Protein accession | YP_003680482 |
|---|
| Protein GI | 297561508 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000490216 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.117456 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCCGA ACCACCGCCC TGACGAGACC ACACCCGACC CCGAATCCGG CCCCGCGGCG
GCGCCCGAAC GCACGGCCCC GACCCCGGCC GCACCCGCCT CCGGGCCCGA ACGCACGTCC
GCACCAGCGT CCGCGTCCTC GGCCGCGTCC ACGCCCGTAC CCGCGCTGGA GGCGGACCTG
TGCCTGAGCC GGGGTGCCTT CACCCTGGAG GCCTCCCTGA CGGTGCGCCC GGGGGAGATC
CTCGCCCTGC TGGGGCCCAA CGGCGCGGGC AAGTCCTCGG CGCTGCGCGC CCTGGCCGGA
CTGGTGCCCC TCACCGGCGG GCGCGTCCTC GTGGACGGGC GCGACCAGAC CAGGACACCC
GTGGAGCACC GCCCCATCGG CATGGTCTTC CAGGACTACC TGCTCTTCCC GCACATGAGC
GCCCTGGACA ACGTGGCCTT CGGCCCCCGC CACCAGGGCC TGTCGCGGGC GGGGGCCCGC
GAGCGCGCCG CCGAACTACT CGCCCACATG GACCTGTCCG CGTACGCGCG CGTGCGGCCG
CGCCGCCTCT CCGGCGGCCA GGCCCAGCGC GTGGCGCTGG CCCGCGCCCT GGCCGTGCGC
CCGCGCCTGC TGCTGCTCGA CGAGCCCATG GCCGCCCTGG ACGCCAGCAC CCGCATCGAC
GTGCGCGCCC GGCTGGGCCA CCTGCTGGAG GAGTTCGACG GGGCCACGGT GCTGGTCACC
CACGACCCGC TCGACGCCAT GGTGCTCGCC GACCGGGTGG CGGTGATCGA GGGGGGCCGG
GTCGTCCAGC AGGGCGAGCC CGCCGAGGTG GCGCGGCGCC CCCGCACCGC CTACGTCGCG
CGGCTGGTGG GGCTCAACCT CTTCCGGGGC ACGGCCGAGG GCACCACCGT CACCCTGGAC
GGCGACGGTC CCGGCGGGCC CGTCCGGGTG GAGGCGCACG AGGCGCACCG GGGACCGGCC
CTGGTGGCCT TCCCGCCGCG CGCCGTGGCC CTGTACCCGC ACCGTCCGCA CGGCAGTCCG
CGCAACGTGT GGCGGCTGAC GGTGGAGGGG ATCGAGCGGT TCGGCGACCA GGTGAGGGTG
CACCTGGCGG GGAACCCCTC CCTGGCCGCC GACATCAGCC CGGCGGCCCT GGCCGAGCTG
GGACTGGCCC GGGGGGACGC GGTGTGGGCG GGGGTCAAGG CCGCCGAGGT CGAGTGCTAC
CCGGGTTGA
|
|---|
| Protein sequence | MAPNHRPDET TPDPESGPAA APERTAPTPA APASGPERTS APASASSAAS TPVPALEADL
CLSRGAFTLE ASLTVRPGEI LALLGPNGAG KSSALRALAG LVPLTGGRVL VDGRDQTRTP
VEHRPIGMVF QDYLLFPHMS ALDNVAFGPR HQGLSRAGAR ERAAELLAHM DLSAYARVRP
RRLSGGQAQR VALARALAVR PRLLLLDEPM AALDASTRID VRARLGHLLE EFDGATVLVT
HDPLDAMVLA DRVAVIEGGR VVQQGEPAEV ARRPRTAYVA RLVGLNLFRG TAEGTTVTLD
GDGPGGPVRV EAHEAHRGPA LVAFPPRAVA LYPHRPHGSP RNVWRLTVEG IERFGDQVRV
HLAGNPSLAA DISPAALAEL GLARGDAVWA GVKAAEVECY PG
|
|---|
| |