| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_1932 |
|---|
| Symbol | |
|---|
| ID | 9245782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | - |
|---|
| Start bp | 2354482 |
|---|
| End bp | 2356050 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_003679865 |
|---|
| Protein GI | 297560891 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.461546 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.430114 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCCCC TCGTGGCTGT CACCTCACTA CGACGCAAAC TCTCCGTCAG CGCCGCCGTG
GGTCTGCTCC TGGTCCCCGG CTGCCGTGCC GTGGAACAGG AGCTTCCCTA CGCCGAACCG
GTCCGCTCCT CGCCCGACGA CCTGGCGGGG ATGGAGGCGA GCACCGTGTC GGTGACCACC
GACGACAGCG TGGTGAGCTA CCGCTACCCG CGGTTGGGCG ACAACCACCC GCTGACGGTG
GAGGCGCGCA CCGCCATGGC CGCGCGCCAG ACCGCCTTCC TGGAGGACCT GCCGGAGGGG
GGGTCCCCCG AGCTGCACCA GGACACGGTC ATCCTCGCCG CCTCCCCTGA GGTGGTGGGC
GCGCGGCTGA CCGCGACCGC CTCCGCGGGC GGGGACGAGA CCTTCGAGGC CGACACCCTG
TGGTACGACG CGGGCAGCGA GGAGGTGCTG CCCTGGACCT CGCTGTTCCG GGACGAGGAG
GCGATCGAGC AGGCCCACCT GGCCCTGGCC GACGTCCTGG AGGAGGGGTA CGACCTGCCC
GAGCACCAGC TGCCCGGCCT GGTCGGCGAG GTCGCCTCGG GCGAGCGGAC CGCGCCGGAG
GGCGGCGCGT CCGCTGACGG CCGGGACGGG ACGGCCGACG GTGGGGCGGA CGGGGGTTCC
GAGCCGCTCG ACCTGTCCGA GCCCGGCCAG GCCCGCAAGG CCGCCGAGCG CTGGGCGGGC
TCGCCGCTGG GCGACCTGGC ATTCAGCACC GCGGGCGGCC TGGCCGTGCG CATGGACCCC
GACGCGGTGC CCGGCGCGGG CCGGGTCGGC GAGGTGCTGG TTCCGGTGGA GGCCGCCGAG
GTCGAGGGGC TGCTGTCCGA GCTGGGCTAC CTGGCCCGGG AGGCGGCCCT GAGCGGGGAC
GGCCTGGGCG ACGACCTCTC GCAGGACGGG GGCGGCCTGA GCGCCCAGGG GCACACCCTG
GACTGCGAGC GCCTCAAGTG CGTGGCGCTG ACCTTCGACG ACGGGCCGGG GGAGCACACC
GACCGGTTGC TGGACAGCCT GGCCGAGTAC GACGCCCACG CCACGTTCTA CGTGCTGGGT
TCGCTCGTGG ACGACTTCCC CGCACCGGTG GAGCGCATGG CCGAGGAGGG CCACGAGCTG
GGCAACCACA CCTGGAAGCA CGACGACCTG GCGAAGATGT CGGCCGACGG GATCCGCAAG
GACATCGAAC GCACCAACGC GGCCGTGCGC GAGGTGACCG GGGTGGAACC GCCGACCATC
CGGCCGCCCT ACGGGTCGCT GAACGGGACG GTGCGCAAGA CGGTGGAACA GCCCCTGGTC
CTGTGGGACG TGGACACGCT GGACTGGAGG AGCCGCGACA CCGAGGACGT CAGTGAGGCG
GCTCTGGACA ACACCGTGCC GGGGAGCGTG GTGCTCTTCC ACGACATCCA CGAGACCTCC
GTGAAGGCGA TCCCGGACGT GCTGGCGGGG CTGCACCGGC AGGGCTACCA CTTCGTGACG
GTCACCGACA TCTTCGGTTA CCAGGGCATG GAGTCGGGCG ACGTGTACAC CGACGCGCGG
CTCTCGTAG
|
|---|
| Protein sequence | MVPLVAVTSL RRKLSVSAAV GLLLVPGCRA VEQELPYAEP VRSSPDDLAG MEASTVSVTT
DDSVVSYRYP RLGDNHPLTV EARTAMAARQ TAFLEDLPEG GSPELHQDTV ILAASPEVVG
ARLTATASAG GDETFEADTL WYDAGSEEVL PWTSLFRDEE AIEQAHLALA DVLEEGYDLP
EHQLPGLVGE VASGERTAPE GGASADGRDG TADGGADGGS EPLDLSEPGQ ARKAAERWAG
SPLGDLAFST AGGLAVRMDP DAVPGAGRVG EVLVPVEAAE VEGLLSELGY LAREAALSGD
GLGDDLSQDG GGLSAQGHTL DCERLKCVAL TFDDGPGEHT DRLLDSLAEY DAHATFYVLG
SLVDDFPAPV ERMAEEGHEL GNHTWKHDDL AKMSADGIRK DIERTNAAVR EVTGVEPPTI
RPPYGSLNGT VRKTVEQPLV LWDVDTLDWR SRDTEDVSEA ALDNTVPGSV VLFHDIHETS
VKAIPDVLAG LHRQGYHFVT VTDIFGYQGM ESGDVYTDAR LS
|
|---|
| |