Gene Ndas_1397 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNdas_1397 
Symbol 
ID9245247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNocardiopsis dassonvillei subsp. dassonvillei DSM 43111 
KingdomBacteria 
Replicon accessionNC_014210 
Strand+ 
Start bp1712328 
End bp1712858 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content76% 
IMG OID 
ProductEndoribonuclease L-PSP 
Protein accessionYP_003679335 
Protein GI297560361 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.492198 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones5 
Fosmid unclonability p-value0.000402676 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGGCCGGA CACCGCACGA GATCGTCAAC CCGCTCACCC TCGCCGAGCC GACGGGGTCC 
TCCCACGCGC TCGTGGTCAG CCCCGGGCGG GTGGTCCACG TCGGCGGGCA GCGCGCGCAC 
CGCCCCGACG GCAGGATCGT CGGGGAGGGC CTGGCGGAGC AGTTCGACCG CGCGCTCGCC 
AACGCGGTGG AGGCGCTGCG CGCTGCGGGA GCCGAGCCCG CCCACGTGGT GGACATGCGC 
GTCTTCACCA CGTCCATGGC GGCCTACCGT GCCCACGGCC AGAGCATGGG CGCGGTCTAC 
CGGCGGCACA TGGGCCGCTT CCACCCGCCG ACGACGGTCC TGGGGGTGGT GGACCTCCTG 
GACCCCGACG CCGTGGTGGA GGTGGCGTGC ACCGCCGTGG TCCCCGACGC GGCCGGGAGC 
GGACCCCTGC GCGCGGAGCA GGTGTGGAGA CCGGTCGAGG AGGCCGGACG GCCCGGGGTC 
ACCGTCTCCT CGGACGGGGT CGGTCCGCTT CCGGCCCGGG AGTGTCCGTA G
 
Protein sequence
MGRTPHEIVN PLTLAEPTGS SHALVVSPGR VVHVGGQRAH RPDGRIVGEG LAEQFDRALA 
NAVEALRAAG AEPAHVVDMR VFTTSMAAYR AHGQSMGAVY RRHMGRFHPP TTVLGVVDLL 
DPDAVVEVAC TAVVPDAAGS GPLRAEQVWR PVEEAGRPGV TVSSDGVGPL PARECP