| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ndas_1224 |
|---|
| Symbol | |
|---|
| ID | 9245074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014210 |
|---|
| Strand | + |
|---|
| Start bp | 1525275 |
|---|
| End bp | 1526168 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | Type II secretion system F domain protein |
|---|
| Protein accession | YP_003679169 |
|---|
| Protein GI | 297560195 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0116684 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGCACGG TGACGACTCC TGTTCTGCTC GTCGCCGCCG CGGGCGTCCT GCTCGGCGCG
GGGCTGTGGC TGGCCCTGGC GTCGCTGGCG GCGTCCGGTG GTAACTCGCG TACCTCGCGG
GTTCCGCAGT GGCGGGCGCT CCTGTTCGGC CGCCAGCGCC CGTTGAGGTT GGTCGCTGCG
GTCGTCGGCG GCCTGCTGGT CTGGTTCGTC ACCGGGTGGC CGGTGGCCGG TGTGCTCGCC
GCCGCGGGCT GCTGGTGGGG CCCGGCGGTG CTGGGTCCCG ACCGCGGTCA TGAGAAACAG
GTGGCGGGGG TCGAGGCCGT CGCGGCCTGG ACCGAGATGC TGCGCGACCT GATGGCCGGT
GCGGCCGGTC TGCACCAGGC CGTGGCCGCC ACGGTGCCCA TCGCGCCCGA GCCGGTGAGG
GAACCGGTCG CCAGGCTGGC GGAGCGGCTG CGGGCCGGTC AGCCCACGCA GGGTGCGTTG
CGGGCCTTCG CGGACGAGGT GGACAACCCC ACCGCTGATC TGGTTGCTGC CGCTCTGAGC
ACGGCCGCCA CTAGGCACGC CACCGACCTG GGCACGCTGC TCGGAAGCCT GGCGGAGGCC
GCACGTGAAC AGGCGGCGAT GTTGGTGAGG GTGGCGGCGA GCCGTGCCAG GCTGCGCACC
TCCACCCGGA TCATCGTCGG TACGACCGTG GGTATGGCCG CGCTCTTAAT GGCATTCAAT
CCCGGTTACC TAGAGCCTTT TGATGGCTTC CTAGGACAGG TGGTCCTCGC GGGTATCGGG
GGCCTGTGGG CGGGTGCTTT GGTCTGGCTG TCCAGAATGT CCCGCTTCGA TTTGGGGCCG
AGAGTGCTTT CTCCTGGATC CTCGTCCCCT TACGCCTCGG AGGCTCTCCG ATGA
|
|---|
| Protein sequence | MGTVTTPVLL VAAAGVLLGA GLWLALASLA ASGGNSRTSR VPQWRALLFG RQRPLRLVAA
VVGGLLVWFV TGWPVAGVLA AAGCWWGPAV LGPDRGHEKQ VAGVEAVAAW TEMLRDLMAG
AAGLHQAVAA TVPIAPEPVR EPVARLAERL RAGQPTQGAL RAFADEVDNP TADLVAAALS
TAATRHATDL GTLLGSLAEA AREQAAMLVR VAASRARLRT STRIIVGTTV GMAALLMAFN
PGYLEPFDGF LGQVVLAGIG GLWAGALVWL SRMSRFDLGP RVLSPGSSSP YASEALR
|
|---|
| |