| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_3990 |
|---|
| Symbol | |
|---|
| ID | 9158172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 4119668 |
|---|
| End bp | 4121074 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | |
|---|
| Product | transcriptional regulator, GntR family with aminotransferase domain |
|---|
| Protein accession | YP_003648900 |
|---|
| Protein GI | 296141657 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAACG ATAGCAGCGA CGGCCGCTTG GCGACGACGC TTCGCACCTG GATCGAGTCG
GCACCGCCCG GTGCACAGCT CCCGTCCACC CGAAGCCTGG TGACGGCACA CCAGGTCAGT
CCCGTCACGG TGCAGCGCGC CCTGCGTACA CTCAGCGCGC AAGGACTGAT CGAATCTCGA
CCCGGTGTAG GAACTTTCGT GCGCAGAGAG CGAGCTACCC GGCCTGTCGA TTTCGGTTGG
CAGACCGCGG CACTCGGCGT ACAGGGGCGG CGCACACCTG GTACGCCCAC CGCGCTCCGG
CCGAACGACG GCGACGCCAT CGCCCTTCAG TCGGGATACC CCGCTCGCGA ACTGCTACCC
GAACGACTCG TGCGTACTGC CTTCGCCCGA GCGGCGCGCA ATGAGGCCTT GCTCGATCGC
ACGCCCAGCG CGGGGATCGA CGGATTGCGC TCCTGGTTCG CCACCGAATT GCAGTCGCTC
ACACCCGCCC GAGCGGCGCC CGCGGTGGCC CGTGACGTGG TGGTGACTCC CGGCAGCCAG
GGCGGCCTCC TCACAGCCTT CCGCGCCCTC GTCGGCGCGG GCCGGCCGCT CCTGATGGAG
TCGCCCACCT ATTGGGGCGC CATCTTGGCG GCCGAGAGCG CCGCTGTCGA CGTGATTCCG
GTTCCCAGCG GACCCGACGG CCCTGACCCC GACGTGGTCG AGCGCATCCT CGCCGAGACC
GGGGCTCGCG CCTTCTACGC GCAGCCCGCC TTCGCCAGCC CGACCGGCGC GGTGTGGAGT
ACCGAACGGT CGGAACGCAT CCTGGACGCG GTACGCGCCG CCGGGGCATT CCTCATCGAG
GACGACTACG CCCGGGATTT CGGGATCGAC GCGGAGCCGA CGCCGCTGGC CGCCCGCGAT
GATTCCGGTC ATGTCGTGTA CATCCGGTCG CTGAGCAAAT CGGTAGCGCC GGCGGTCAGG
GTGGCGGCGA TCATCGCGCG AGGCCCTGCC CGCGACCGGA TCCTGGCCGA TATCCAGGCC
GACGCGATGT ACACGAGCGG CGTTCTGCAA ACCGTGGCAC TCGATGTGAT CACGCAGCCT
GCGTGGCGCA CTCATGTCCG GCGGCTAGGG CGACAACTCG GCGAGCGCCG AGACCTCTTG
CTGCGCTCCC TCCGCGACCA CGCACCGTCG GTCACGGTGA ACCGGGTGCC ACGCGGCGGG
CTCGCCCTCT GGGCACGACT GCCCGACGAC GTGGACCTGG CTGCTCTCGT GGACGAGTGC
CGGCGGAACG GGCTCATCGT GGGTTCCGGC GACGAATGGT TCCCCGCCGA ACCCACGGGG
AATCATCTGC GGCTGGCGTA CGCCGGACCT GAGCCCTCCC GGTTCGAGGA GGCGGCGAAG
ATCCTGGGGG CCGCCCTCAC CCGGTGA
|
|---|
| Protein sequence | MSNDSSDGRL ATTLRTWIES APPGAQLPST RSLVTAHQVS PVTVQRALRT LSAQGLIESR
PGVGTFVRRE RATRPVDFGW QTAALGVQGR RTPGTPTALR PNDGDAIALQ SGYPARELLP
ERLVRTAFAR AARNEALLDR TPSAGIDGLR SWFATELQSL TPARAAPAVA RDVVVTPGSQ
GGLLTAFRAL VGAGRPLLME SPTYWGAILA AESAAVDVIP VPSGPDGPDP DVVERILAET
GARAFYAQPA FASPTGAVWS TERSERILDA VRAAGAFLIE DDYARDFGID AEPTPLAARD
DSGHVVYIRS LSKSVAPAVR VAAIIARGPA RDRILADIQA DAMYTSGVLQ TVALDVITQP
AWRTHVRRLG RQLGERRDLL LRSLRDHAPS VTVNRVPRGG LALWARLPDD VDLAALVDEC
RRNGLIVGSG DEWFPAEPTG NHLRLAYAGP EPSRFEEAAK ILGAALTR
|
|---|
| |