Gene Tpau_2022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpau_2022 
Symbol 
ID9156177 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTsukamurella paurometabola DSM 20162 
KingdomBacteria 
Replicon accessionNC_014158 
Strand+ 
Start bp2107059 
End bp2107724 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content69% 
IMG OID 
Productisochorismatase hydrolase 
Protein accessionYP_003646973 
Protein GI296139730 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.85317 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACCAGCC CCACGGATGC CTCTGATTAC ACATCGCCGC ACTGGGATCG TGCGGCGCTC 
GTCCTGATCG ATGTGCAGAA CGATTTCGTC GACGGCGCCG CGTCGGTACC GGGAACCCGG 
GCGGCGCTCC CTGCCATGGC CCGATTGCTC GCGGCGTTCC GCGCGGCACA CCGCCCGGTG 
GTGCACGTGG TCCGTCTCTA TGTTCCCGGC GGCAGCGACG TCGACCCGTT GCGCCGATCG 
GCGATCGAGA GCGGCATCCG GATCGCGGCA CCGGGCACAG CCGGTGCCGA CGTGGCGGCC 
TCGCTGCTGT CGGTGCCGCT CGATGCCGAA TGCCTCCTCG ACGATCGGCT CCAGCAGGTG 
GGCGACGATG AAGTGGTGCT GTTCAAGCCG CGCTGGTCGG CGTTCTATCG CACATCGCTC 
GATGAACACC TGCGCGGTCG TGGAGTGGAC ACCGTCGTCG TGGCGGGGTG CAACCTGCCG 
AACTGCCCGA GGGCGACGCT CTTCGATGCG ACCGAGCGGG ATTTCCGGGC CGTGGTCGTC 
GCCGACGCGA CCTCACAGGC CACGGAGCGC CGGCTCGACG ACCTGCGGTT GATCGGAGTC 
GAGGTCCGGA GGACCGCGCA GGTGGAGGCC GCCCTGGCCG AAAACGCAGT GGCGCCCAAC 
CCATAG
 
Protein sequence
MTSPTDASDY TSPHWDRAAL VLIDVQNDFV DGAASVPGTR AALPAMARLL AAFRAAHRPV 
VHVVRLYVPG GSDVDPLRRS AIESGIRIAA PGTAGADVAA SLLSVPLDAE CLLDDRLQQV 
GDDEVVLFKP RWSAFYRTSL DEHLRGRGVD TVVVAGCNLP NCPRATLFDA TERDFRAVVV 
ADATSQATER RLDDLRLIGV EVRRTAQVEA ALAENAVAPN P