| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpau_1719 |
|---|
| Symbol | |
|---|
| ID | 9155869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Tsukamurella paurometabola DSM 20162 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014158 |
|---|
| Strand | + |
|---|
| Start bp | 1792821 |
|---|
| End bp | 1794146 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_003646676 |
|---|
| Protein GI | 296139433 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0706811 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCGAGG TCGTCTCGGG TCGCCGCCTC GGCCGGAGGA TCCTCGGGCA GGCACTGCCC
GCCCTCGGCG TCCTCGCGGC CGAACCGCTC TATCTGCTGT GGGACACGGC GATCATCGGT
CGCCTCGGTG CGCTGCCGCT CGCCGGACTC GCGGTCGGTG GGCTCATCCT CGCCACCGTC
TCTACCCAGC TCACCTTCCT GTCGTACGGC ACCACGTCAC GGTCCGCGCG ACGGTACGGC
GCCGGTGACA CCGACGGGGC CGTGATCGAA GGTGTCCAAG CCACGTGGCT CGCGCTCGCC
GTCGGGGCGG TCCTGCTGGC TCTGGTGCAG GTTCTCGCGG GTCCGGTGAC GCGGGCGATC
GCGGGCCGCG ACGAGATCGC GACCGCCGCC GAATCATGGC TCCGGGTGGC ATCCTTCGGT
ATCCCGATGA TCCTGCTGAC GATGTCGGGG AACGGTTGGT TGCGGGGCGT GCAGCGGCCA
CGACCACCCC TGGCCTTCGT GCTCATCGGG TTGGGACTGT CGACGGTGCT GTGCCCGATG
CTCGTGCACG GTGCCCTCGG GCTGCCCGAG CTGGGGCTGG TCGGGTCGGC ATGGGCGAAT
CTCGCCGGTC AGGCGGTCAG CGGAACGCTG TTCCTGGGCG CCCTGATCCG GGCTGCGACC
TCTCTGCGCC CTCGACCGTC GATCGTGCGG GCGCAGGTGG TGCTGGGACG CGATCTGATC
GTGCGGAGCC TGTCGTTCCA GATCTGCTTC ATCTCGGCGG GGGCGGTCGC TGCGCGCGCG
GGCGCCCAGT ACGTCGGCGC GCACCAGATC GCCCTGCAGT TGTGGAACTT CGTCGCCCTC
GTTCTCGATT CATTGGCGAT CGCCGCCCAA ACGCTCGTCG GCGCCGCACT CGGCGCGAAG
GACCGGATCG GCGCGCGGCG CCTAGGATGG CGGGTCACCG TCTGGTCGAC GGGTTTCGCG
GTCGTGATCG CCGCGGGACT CGCCGCCGCG AGCGGGAGTC TGCCGCACGT CTTCACCACC
GACCCCGCGG TGCTCGAGGC ACTGCGGGTG CCGTGGTGGT TCCTCGTGGC CATGATCCCG
GTCGCCGGTG TGGTCTTCGC GCTCGACGGC GTGCTCCTCG GTGCCTCCGA TGCCGCGTTC
CTGCGCACGG CGACGATGGC ATCCGCGCTG GTGGGCTTCC TGCCGCTGAT CTGGTTGTCA
TACGCGTTCG GGTGGGGGCT CGCGGGTATC TGGTCGGGGC TGGCCGCGTT CATGGCGTTG
CGCTGCCTCA CCGTCGTGCT CCGGTTCTCC GGTACCACCT GGGAGCGGGT CGGCGCTCCG
GGCTGA
|
|---|
| Protein sequence | MTEVVSGRRL GRRILGQALP ALGVLAAEPL YLLWDTAIIG RLGALPLAGL AVGGLILATV
STQLTFLSYG TTSRSARRYG AGDTDGAVIE GVQATWLALA VGAVLLALVQ VLAGPVTRAI
AGRDEIATAA ESWLRVASFG IPMILLTMSG NGWLRGVQRP RPPLAFVLIG LGLSTVLCPM
LVHGALGLPE LGLVGSAWAN LAGQAVSGTL FLGALIRAAT SLRPRPSIVR AQVVLGRDLI
VRSLSFQICF ISAGAVAARA GAQYVGAHQI ALQLWNFVAL VLDSLAIAAQ TLVGAALGAK
DRIGARRLGW RVTVWSTGFA VVIAAGLAAA SGSLPHVFTT DPAVLEALRV PWWFLVAMIP
VAGVVFALDG VLLGASDAAF LRTATMASAL VGFLPLIWLS YAFGWGLAGI WSGLAAFMAL
RCLTVVLRFS GTTWERVGAP G
|
|---|
| |