| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_4113 |
|---|
| Symbol | |
|---|
| ID | 9140833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 5276916 |
|---|
| End bp | 5278313 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | excinuclease ABC C subunit domain protein |
|---|
| Protein accession | YP_003632123 |
|---|
| Protein GI | 296124345 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAAA ACTCAGAAAG TTCTGATAAT CCCGAGTTTG ACGAGGGTGC ACCCTTGGCA
GCAATGCCCG AGGATCGTCT TTTTTCCGGT GAACGACCTT TACCACGTGA GAAAGTGAAA
ACTTTCCCTA CGACACCCGG CGTCTATCTC ATGAAAGATG CTCGCGGTCG CGTGATCTAT
GTCGGAAAAG CGGTCAACCT AAGAAGTCGC GCTGGAAGTT ATTTTACCAA GCAGGCTGCC
ATCGACCGGC GGACGGCAGA CCTCATCCCG GAAATTCACG ATATCGACTT CCTCCATGCC
GATTCAGAAG TCGATGCCCT GCTGCTGGAA TCGCGATTGA TTAAGGATAT TCAGCCGCGA
TTCAATTCCG ATTTAAAAGA CGACAAGACA TTCCCTTATC TGCAGATCAC CACGCGCGAG
CCCTTTCCAC GAATTGAGTT CACCCGCAGG CCGAAATCTC GCGGGGTGAA ACTCTTCGGG
CCATTTACCA GTGCTCGAAA ACTTCGCGGA GCCATCGCGG TTCTGCAAAA GATTTTCCGC
TTTCGCAATT GCTCGCTCGA TATCGACCCG AATGAAGAGA AATGGCGCTG GTTTCGCCCT
TGTCTGCTGG CCAGTCTCGG ACAATGCACC GCTCCCTGCA ATCTCAGGAT CTCCAAAGAA
GATTACCGGC GGGATGTGCG CCGGTTGATC ATGTTCCTCG AAGGAAAGAA AGAGCGTTTG
CTCAAGGTGA TGAACCGCGA GATGCTGGAG GCTTCGAAGG AACTCAAGTT CGAGAAAGCT
GCCCGGCTGC GTGATCAGAT CAAAGCTTTG ATGACCTTGC AGGAACGCGG CGATCTGGCA
TCCCACGCAC AACCCGAAGC ATTCTACGTC GATCCCAAAA AAGGACTCCT GGGGCTCAAG
AAGGTCTTTG GTCTCTCAAC TTTGCCACGC AGAATTGAAG GTGTCGATAT TGCTCATCTG
CAAGGTGGGG AGACCGTCGC CAGCCTGGTG CAGTTTATTG ATGGAGTCCC CTTCAAGCAG
GGATACAAAC GATTTAAGAT TCGCACTGTC GATGGTGTCG ATGACTTTGC TTCGATGAGA
GAAGTTGTGA GCCGCCGCTT TCGCAGGCTC GATCAGGAAG GGGAGAATTT CCCGGATATT
CTGCTGATCG ATGGAGGCAA GGGCCAACTG GGTGCAGCCA TGGAAGCGCT CAAATCCATC
GAAGTCAAAC TTCCACTGGT GATCTCGTTG GCCAAACGCG AAGAAGAGAT TTTCCTGCCA
GGCGAGAGCG AGCCGAAGGT TCTAAGTCGC CACTCGTATG CACTGCGGCT ATTGCAATCC
GTCCGCGATG AATCGCACCG CTTCGCCCAG CAGTACCATC ATCTTCTCAG ACGAAAGTCC
ACCTTTGGAG AAGAGTAA
|
|---|
| Protein sequence | MSENSESSDN PEFDEGAPLA AMPEDRLFSG ERPLPREKVK TFPTTPGVYL MKDARGRVIY
VGKAVNLRSR AGSYFTKQAA IDRRTADLIP EIHDIDFLHA DSEVDALLLE SRLIKDIQPR
FNSDLKDDKT FPYLQITTRE PFPRIEFTRR PKSRGVKLFG PFTSARKLRG AIAVLQKIFR
FRNCSLDIDP NEEKWRWFRP CLLASLGQCT APCNLRISKE DYRRDVRRLI MFLEGKKERL
LKVMNREMLE ASKELKFEKA ARLRDQIKAL MTLQERGDLA SHAQPEAFYV DPKKGLLGLK
KVFGLSTLPR RIEGVDIAHL QGGETVASLV QFIDGVPFKQ GYKRFKIRTV DGVDDFASMR
EVVSRRFRRL DQEGENFPDI LLIDGGKGQL GAAMEALKSI EVKLPLVISL AKREEEIFLP
GESEPKVLSR HSYALRLLQS VRDESHRFAQ QYHHLLRRKS TFGEE
|
|---|
| |