| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_4102 |
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| Symbol | |
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| ID | 9140822 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Planctomyces limnophilus DSM 3776 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_014148 |
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| Strand | + |
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| Start bp | 5260595 |
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| End bp | 5262163 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | |
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| Product | Carbohydrate-selective porin OprB |
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| Protein accession | YP_003632112 |
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| Protein GI | 296124334 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.792226 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGCCGTC GAATTCTCTT TGTGCCCCCA GTGGGGCATG AAATGGACGG TGCATTGAAG
AGCTTACAGT TGTTGACCGG GCAGGGAGGC CTTGGAATGG CGACGAAGTC GTGGCGAAGT
TGGGCTCATG CTGGCTGGCG TCTGGGGTCT CTGCTCCTCG CTTCTTCCAT GGCCGTCGAG
GGTCTGGCGG AAGAATCACT GTTTTCTGAC AGTTGGTTTC TGCGCGGGAC TTCAACATCG
CGCTCTGTCG ACGTCGATTC ACCGCTCAGT GGTGAGTCGT TTTCTCCATC GGTTATCGAA
ACTGATGACT ATCGCCTGGC TTCTTTTTCG AGTGCAGACA GCTTCTCGAT CGATCCCGTC
TCGGCAGCAC TCAATGCCGA CTCCTGGCGT GATCGCACCC AGCTGACTGG CAACTGGGGT
GGCTATCGCG ATGCACTGGC CGAAAGCGGA GTGACCATCG AAGCTTCATC GACGAACATC
TATCAAGGTG TCGCCTCTGG CGGAAACAAT AATGAATTTG CCTTCGGTGG ACGCGGCGAT
CTCTTTCTGA AAGTGGATGG CGGGAAAGCG GGTCTGCAGG AAGGCTTGCT GATTACGTTG
CACGGAGAAA TGAACTACGG CGATTCGGTC AATCGCTCGA CAGGAGCACT TCTGCCGATC
AGCTTCCCAC AAGTATTTCC CACGGGCGAT GCTCCCTCTG TCGCACTTTC CAATGTGAGT
GTAACGCAGT TTCTTTCGGA ATCGATGCTG GTCTATCTGG GAAAGATCAA CACACTTGAC
GGCTTTATCC GGCCCTACCG TGGGAATTCG CACGGGATCG ACGGCTTTAT GAACGGTGCA
TTTCTCTTTC CCACAGTGCT GGGCCGCGTG ATTCCTTACT CCACTTATGG CGGTGGTGTG
GTCTTTTTGA GGGAAATGCA GCCGATCCTG TCGATCAATG TGTTCGATAC CAACAGCACT
CCCACCACCA GTGGGTTTGA TGAGTTCTTT AATAATGGCG CATCGCTGTA TATCGAGGGG
CGCATCCCGA CCAGCTTTTT TGGCATGGAA GGACTGCACT CACTTTCGGG GGCTTACAGC
AGTGGAACTT ATCGAGCAAC AGACCCCGGG CTCAACTACA TCATCGAAAG AATTCGCGGC
CTGAATGTCC CTGCACCACA GGAAACGGGT TCGTGGGCAT TTGAGTATTC TTTCAGCCAG
GCCTTGTGGG TAGATGCCAC AGACTCCAAG CGAAGCTGGG GCCTGTTTGG CAGCCTGGGG
ATTGCCGACG GCAATCCGAA TCCCATCCGC TGGGGATCGG ATATCGGCAT TGGTGGCTCC
AGCCCCCTGG TTTCACGCCC GAATGACAAG TTCGGCGTGG GATATTACTA CCTGGGTGTG
AGCAGTGAAC TGAGGCAGAT TGGGCCCATT CGCACACCAC TCCGCGATGA GCACGGTGTC
GAACTCTTCT ACAACTATCA GGTCACACCG ACATTCCAGC TGACGCCAGA TCTGCAGATC
ATTACGCCCG GAATTTCGAC GTTCGACACC TCGGTGAACG TCGCCTTGCG GGCGAATCTG
ATCTTTTGA
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| Protein sequence | MCRRILFVPP VGHEMDGALK SLQLLTGQGG LGMATKSWRS WAHAGWRLGS LLLASSMAVE
GLAEESLFSD SWFLRGTSTS RSVDVDSPLS GESFSPSVIE TDDYRLASFS SADSFSIDPV
SAALNADSWR DRTQLTGNWG GYRDALAESG VTIEASSTNI YQGVASGGNN NEFAFGGRGD
LFLKVDGGKA GLQEGLLITL HGEMNYGDSV NRSTGALLPI SFPQVFPTGD APSVALSNVS
VTQFLSESML VYLGKINTLD GFIRPYRGNS HGIDGFMNGA FLFPTVLGRV IPYSTYGGGV
VFLREMQPIL SINVFDTNST PTTSGFDEFF NNGASLYIEG RIPTSFFGME GLHSLSGAYS
SGTYRATDPG LNYIIERIRG LNVPAPQETG SWAFEYSFSQ ALWVDATDSK RSWGLFGSLG
IADGNPNPIR WGSDIGIGGS SPLVSRPNDK FGVGYYYLGV SSELRQIGPI RTPLRDEHGV
ELFYNYQVTP TFQLTPDLQI ITPGISTFDT SVNVALRANL IF
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