Gene Plim_3977 details

Gene Information

• Locus tag: Plim_3977
• ID: 9140697
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 5100303
• End bp: 5102453
• Gene Length: 2151 bp
• Protein Length: 716 aa
• Translation table: 11
• GC content: 56%
• Product: TPR repeat-containing protein
• Protein accession: YP_003631987
• Protein GI: 296124209

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGACCAC AAATCATCGG CATGGCCCTG GCGGTTCTGA TCGCCTTCTC CGGGTGCGCA 
TCCTCGAAGG GGAGTCTCTT CGGCTCGAAA TCCAAATCCA CCGATAGCAC AAACTCGAAA 
ATTGCCAGTT CCAAATCAGA CGGGAAGAAA TCTCCCAAGC AGGAAGAGCT GGAAGATCTG 
CTGGGCTCTC GCAAAGAGAC TCCCGTCGCC TTTCGCGGTG GTTCTGGAAC TTCTCCTTCA 
AAGAAAAAAG ACACTCGGCT CGAAAACCCG GATCAACCGT TTGGAGATAA CACACGCCTG 
TCATCCAATC GATCGATTCG TGATCTCATG AGAGATGGGG CCAAGTACGA ATCGCAACAG 
AAGTGGGATC AGGCCGTCGA CGCTTACGAA AGTGTCCTCT TAAGTGAGCC TCAACACGCA 
GAAGCTCATC ATCGTCTGGC TGTGATCGCC GACCGTCGAG AAGATTACCG TCTGGCTGAT 
CAACACTATC GCGTGGCGAT GCAACGAAAG CCCACAGATG CCAATCTCCT CAGCGACGTC 
GGTTATTCTC ACTTTCTCCG CGGCGAACTC GACCGGGCCG AAGGCTATCT GAAGCAGGCC 
ATCGAATCCG ATAACAAACA CCGAGTGGCC CATTTGAATC TCGGTCTCGT TTACGGAAAA 
CAGAACCGCT ATGACGAATC GCTGGCGATG TTTCAGGCTG TCGCCTCGGA AGAAGAAGTC 
CAGCGGAATA TGGCGACACT CTTTCCGGAT GGCCCACCTG CAGGACAGGA TACTCAACTG 
GCCAGCCATC GAAATGCGGC TGCAGTTCCC GCAGGTCGAA CGCCTCGAAA TGACCTGATG 
CCCGAATGGG CCAACACTCC CGCTGGCTCT CAACCTGCAG GTTCAACATC CACAAACTCC 
ATGATTCCAC CGGCAGGCAA CCCCACTGCC AGCGATGCCT GGGCACTGTC ATCTCCAGGA 
ATGTCATCTC CAGGAATGTC ATCTCCAGGT ATGGCATCGA ATGGGATGAA CAGTTCTCCT 
GCCAACGCCG GAGTCGCTAA CGCTAATTCG TCGAACTCTC AGCCATCTGG CAATGATTTC 
TGGCAAGGCA ATGCTGCCAC AAACACAGCC AGCCCTGATT TCCCGCCCCG CTCTTCGAGT 
GTCCCCTCCA CAGGTCTGGC GCCTCGAACA CAAATGGCCA ACATTTCGCC ACCTGCTCAG 
GGCATGCCGA CTGCCAATGG ATCGTTCAAT TCACCAGAAT CAATGGCAGC TCGTTCTTTG 
GGAACACCCA TGCAAACGAA CTCAGCCGCT CTGGCTGCTG AACTTGCCAT GAACTCGGGC 
TGGGGCAATC TTTTTCCCAC AAGTTCCAAT TATGGAACTC CGGCGGCATC GTCAGCACAG 
CAAGGTGGCC CATCGGTACC ACAACTTCCC GTAATGACGC AGCAAACGGC CTGGCCTCAA 
GCTCCTGGGG AATATCGTGA TCCGGCCGCA GGCAATAACC TCTCAGGCAA TAACCTCTCC 
AGGGGTGGCA ATCCTCCAGC GACAGTCAGT CCGACGGCTC CTGCCGGGAT GCCTGGTGAT 
ACGAGAAACA TGAACCCGCC TGGCACGAGT GCCGCAGCAG GCGTCTGGCC CACCACCAGT 
GTTCCGTGGA ACTCCCCCAC CAGCAATCAA CCATCCGCCT CCAGTTGGGG AGACTCATCT 
CAACTCGCCA ATAGGCCTCA AGCGAACGGC GCCATGAATC AGGCCCCGCC ATCGATGCCT 
CAGATCCAGG CCGGCCCTTC GAGCAGTTCA ACTTTTGATC AGCAAAGTAT GGCTGACACA 
GAAAAACCAC CACTGTTCCC CTCAGTCCAA TGGGCCTCTC CTCACTCAAC TCCCTGGAAT 
TCAACGACTC AAGGCTCAGT CACTCAGTCC GGAAATGAAC TCTCGTCGCA AATTCAACCC 
GCCGGCTTCC AACAGGAAGC TGATCCGCGC AGTTCAACTT CTGGCCAGGG CTCGGCGACC 
GGAAACATGT CCCGCTCCAA TGGAAATTCA CCTGAGCCAT GGCCCTATGG CCCTGCCGCA 
AGTACCAATC GACCCAATGT TCGGCCCACT GCTTCCTTGA ATGTGGATGG TCGTTCGGGC 
ACTTCCAACA ATTCCACCAG CGGGCCGCCC CCCTGGCCTT ACGGGCAATA A 

 

Protein sequence

MRPQIIGMAL AVLIAFSGCA SSKGSLFGSK SKSTDSTNSK IASSKSDGKK SPKQEELEDL 
LGSRKETPVA FRGGSGTSPS KKKDTRLENP DQPFGDNTRL SSNRSIRDLM RDGAKYESQQ 
KWDQAVDAYE SVLLSEPQHA EAHHRLAVIA DRREDYRLAD QHYRVAMQRK PTDANLLSDV 
GYSHFLRGEL DRAEGYLKQA IESDNKHRVA HLNLGLVYGK QNRYDESLAM FQAVASEEEV 
QRNMATLFPD GPPAGQDTQL ASHRNAAAVP AGRTPRNDLM PEWANTPAGS QPAGSTSTNS 
MIPPAGNPTA SDAWALSSPG MSSPGMSSPG MASNGMNSSP ANAGVANANS SNSQPSGNDF 
WQGNAATNTA SPDFPPRSSS VPSTGLAPRT QMANISPPAQ GMPTANGSFN SPESMAARSL 
GTPMQTNSAA LAAELAMNSG WGNLFPTSSN YGTPAASSAQ QGGPSVPQLP VMTQQTAWPQ 
APGEYRDPAA GNNLSGNNLS RGGNPPATVS PTAPAGMPGD TRNMNPPGTS AAAGVWPTTS 
VPWNSPTSNQ PSASSWGDSS QLANRPQANG AMNQAPPSMP QIQAGPSSSS TFDQQSMADT 
EKPPLFPSVQ WASPHSTPWN STTQGSVTQS GNELSSQIQP AGFQQEADPR SSTSGQGSAT 
GNMSRSNGNS PEPWPYGPAA STNRPNVRPT ASLNVDGRSG TSNNSTSGPP PWPYGQ