| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3918 |
|---|
| Symbol | |
|---|
| ID | 9140636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 5031676 |
|---|
| End bp | 5033214 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | |
|---|
| Product | protein of unknown function DUF1214 |
|---|
| Protein accession | YP_003631928 |
|---|
| Protein GI | 296124150 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCTG ACAACCAACG GACCATTCTA GCCGCCGTGC TTGGCACAGC TCTCGCGATC
CCCATCAGCC TGTTCGCACA GGAACGCTAT TCCATCCCCG CCGATCCAAA GCTCAAGTAT
TCGACGCCCA TCGCGCCGGG GGTGGCGCTG CCCGACAAGA TCGAGAGTTC CATCGGAACA
CTCAATCTCA GCTACGGCTA TCCGTCGGCC GATACGGTCG AGAAGATCTA CGACAACCTC
GATCGCTCCC GCGCCCTGCA GGCCTACCTC ATGGCGATTC CCATCGTGAA TCAGGCGGGT
ATGCGCGACT CGTTGAGCAA GTTCGGCCCG GCCAACCAAA CCGACGTCAT CTGGGAAAAC
CTCGTCGATC CGCGTACTGT CGAACTCACC GCCAACGACA ATACGATCTA CAACTTCATG
TGGATTGATA CGAAGAAAGG CCCGCTGGTT CTCGAAGTCC CTCCCGAGGT GCTCGGGCTG
GTGAATGACT TCTGGTATCG CTGGGTCGGC GATGTCGGCA TTACGGGCGA GGATCGCGGC
AAGGGTGGCA AGTATCTCGT TCTTCCACCG GACTATAAAG GCGAAGTGCC ACCGGGGTAT
TTCGTACTGC GGCCGAGCAC CTACGGCAAC TGGTTCGTTT TTCGTGCATT CGTTGTCGAT
GGCTCCACCA AGCCCGGCGT GGAGTCGGTC AAGAAACACC TCAAGATTTA TCATCTCTCC
GAAGCCGCAA ACCCGCCGGC GATGAAATTC GTCGACGGGT CGGGTGTTCC CGCGAACTTT
GTCGCCCCCG GCGACTACAC CTTCTGGGAG ATGCTCAATC AGGTCATTCA GGAAGAACCC
GCCGGCGGCA GCGACCCGAC GACGCTCGGC CTCTTCGCTT CGATCGGCAT CGTGAAGGGC
CAACCATTCG CACCCGATGA ACGGATGAAG AAGATCCTGA CAGATGCCGC AAACATCGGG
GCAGTGACCG CACGGACCAT CGCTTTCAAG ATCCGCGACA AGGACGCCTA CTACTTCCCC
GACAGCACGT GGCGACTGCC ATTCTTCGGC GGTTACAAGT TCGAGAGTGC GCCCGGTGTC
ACGAACATGG ACGGCTACAT CTTCTATTAC TACTTCGCAA CCGGCGTCAC CCCGGCCATG
GAAATGAAGA TGGTCGGCAA AGGCTCGCAG TATCCGTGGT CTGTGCAGGA TTCGAATGGC
AACCCCTTTG ATGGTGGCAA GAATTACAGG ATGCGCCTTC CGCCCAACGT GCCTGTGAAG
GACTTCTGGT CCGTGATTGT TTATGACAAC CAGACGCGCT CCATGATCCA GACAGATCAA
AAAGCACCGA GCGTCAGCAG CCAGGACAAG GAATTGAAGA AGAACCCCGA CGGTTCAGTC
GATGTCTTCT TCGGCCCCAA GGCCCCGGCT GGCTTCGAGA ACAATTGGGT GCAGACGATC
CCCGGCAAAG GCTGGTTCAT GATCCTGCGA CTCTACGGCC CGCTCGAGCC GTGGTTCGAC
AAAACCTGGC GCCCCGGCGA GATCGAACTC GTGAAGTAA
|
|---|
| Protein sequence | MKADNQRTIL AAVLGTALAI PISLFAQERY SIPADPKLKY STPIAPGVAL PDKIESSIGT
LNLSYGYPSA DTVEKIYDNL DRSRALQAYL MAIPIVNQAG MRDSLSKFGP ANQTDVIWEN
LVDPRTVELT ANDNTIYNFM WIDTKKGPLV LEVPPEVLGL VNDFWYRWVG DVGITGEDRG
KGGKYLVLPP DYKGEVPPGY FVLRPSTYGN WFVFRAFVVD GSTKPGVESV KKHLKIYHLS
EAANPPAMKF VDGSGVPANF VAPGDYTFWE MLNQVIQEEP AGGSDPTTLG LFASIGIVKG
QPFAPDERMK KILTDAANIG AVTARTIAFK IRDKDAYYFP DSTWRLPFFG GYKFESAPGV
TNMDGYIFYY YFATGVTPAM EMKMVGKGSQ YPWSVQDSNG NPFDGGKNYR MRLPPNVPVK
DFWSVIVYDN QTRSMIQTDQ KAPSVSSQDK ELKKNPDGSV DVFFGPKAPA GFENNWVQTI
PGKGWFMILR LYGPLEPWFD KTWRPGEIEL VK
|
|---|
| |