Gene Plim_3684 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlim_3684 
Symbol 
ID9140402 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePlanctomyces limnophilus DSM 3776 
KingdomBacteria 
Replicon accessionNC_014148 
Strand
Start bp4739781 
End bp4741772 
Gene Length1992 bp 
Protein Length663 aa 
Translation table11 
GC content50% 
IMG OID 
Productalpha amylase catalytic region 
Protein accessionYP_003631695 
Protein GI296123917 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCATCGC TACCAGAAGC TTCTCTCCCT CATCGTTCAA CATCAGCACC ACTCTCCGAT 
GGAGAATTGC GTAAGCTGAA ACTGCGACTC ATTGACCGCA TGCAGCGCCG ATTCGGAGGC
GACTTTCCCG ATGGCGACTG GGATCTTCTC GAACGTCGTC TGCAAGAACA GCACCAGCTC
CTATTTCAAA GTTTCTACCA GCTCTACGGC GACCGCTTTG ATTCGTTCTA CCATCTCGAA
GAACTGATGG CTGTCGTCTT TCGTTCGGTT CTTGAGCGAC CTGCAGAACT CAAGGCGTTC
GACGCTTTGC GAGAATCGGA TAAAGACTGG TATCTGGCAC CACGACTCAT GGGAGCCATG
TGCTATGTCG ATCTCTTCGC GGGAACGCTG CGAAATCTTG AAGCCAAAAT TCCCTATCTG
ATTGAACTGG GAATTACCTA TCTTCACTTA ATGCCTATTT ATAAAGTTCA TTCGACCGAT
TGCGATGGAG GGTATGCCGT CAGCGATTAT CGCACGATCA ATCCCAGGTT CGGGACAATG
GAAGATCTGG AGCATCTGGC AACGCAACTG CGCCGCCATG GGATTTCTCT CGTGCTTGAT
TTCGTGTTCA ACCATACTTC CGATGAGCAT CAATGGGCCC AACGAGCATT GAATGGCGAA
CGCGACTATC AGGATTATTA TCTCTTCTTC AAAGATCGGG TTTTACCCGA TCAATACGAA
CGGACTTTAG TTGAAGTCTT TCCCGAGGAG CATCCCGGTG CATTCACATA TCAGACAGCA
CTCGGCCAAT GGGTCTGGAC AACGTTTTAT ACTTCTCAAT GGGATCTCAA TTATCGCAAC
CCCGAAGTGC TGGTGCGAAT GCTGGACGAA CTCCTGTTCC TTGCCAATCG AGGCGTCGAA
ATCGTTCGTC TGGATGCCAT TGCATTTATC TGGAAGGAAT TAGGAACCAA CTGCCAGAAT
CTCCCTCAGG CGCATACGAT CGTCAGTGTG CTCAATGCTG CCACGCAAAT TGCAGCACCT
GCTGTGGTCT TCAAGTCCGA AGCGATTGTG CATCCTGATG AAGTCCGTAC TTATATTCAT
CGTGCGGAAT GCGTTCTCAG TTACAATCCG GAACTGATGG CACTTCTTTG GGAATCGTTG
GCGACCCGAA ATATCCGCAC GTTACTCGCT TCTGTCAGAA AAAGATTTCC TCTCCCGGAC
GGTTGTGTCT GGGTGAACTA TATAAGAAGC CATGATGATA TTGGCTGGTC GATCACCGAC
GAAGAAATCC GCGAGGCAGG CTATGACCCG GTTGCCCATC GACGATTTCT CACGCAGTTT
TATACAGGTC GGGTCGAAGG TAGTTTTGCT GAAGGTGTCC CCTTTCAGGA GAATTCGAGT
ACAGGTGATG CCCGTGTTTC CGGGACATGT GCCTCATTAG CCGGTCTGGG AAAAGCCATT
CGCAATCAGG ATCCTGTCGA AATCGATCTC GCAATTGGCA GAGTGTTGCT GCTATATGGT
GTCGTCATGA CCATTGGTGG TATTCCGCTG ATCTATTTAG GAGACGAGAT CGGTTCGTTG
AATGATGAAA GGTATTTAGA CGATCCATTA AGAAAAGCGG ATTCGCGTTG GATTCACAGG
CCGCAATTCC CGTGGGAGCA GATGCAGGAG GTGGCCGATC ATGATACTCC GGCTGCCCGC
ATTCATGACG GCATTCTGAA ACTGGGGATC ATCAGGCGAC AGAATCTGGC CCTGCGCCCC
GGGAAAACGG AGTTTGTAGG GACAGGCAAC GATCATGTTC TCGGTTACTT CCGCACGCAT
GCACAGGCCA GCGTACTGAT ACTTGCGAAC TTCACAGAGC AGGTTGAAGC GGTGGAAGGC
CGTATTCTTC GCGGATTAGG CTTACGGCGG ACAGTCATCG ATCAGGTTTC AGGGATGACA
ATCTCTTCAG GAACGACGTT GGAACTCCAG CCGTATCAGT TCATGATTCT TGACCGTCAA
GGAAGTCGAT AA
 
Protein sequence
MSSLPEASLP HRSTSAPLSD GELRKLKLRL IDRMQRRFGG DFPDGDWDLL ERRLQEQHQL 
LFQSFYQLYG DRFDSFYHLE ELMAVVFRSV LERPAELKAF DALRESDKDW YLAPRLMGAM
CYVDLFAGTL RNLEAKIPYL IELGITYLHL MPIYKVHSTD CDGGYAVSDY RTINPRFGTM
EDLEHLATQL RRHGISLVLD FVFNHTSDEH QWAQRALNGE RDYQDYYLFF KDRVLPDQYE
RTLVEVFPEE HPGAFTYQTA LGQWVWTTFY TSQWDLNYRN PEVLVRMLDE LLFLANRGVE
IVRLDAIAFI WKELGTNCQN LPQAHTIVSV LNAATQIAAP AVVFKSEAIV HPDEVRTYIH
RAECVLSYNP ELMALLWESL ATRNIRTLLA SVRKRFPLPD GCVWVNYIRS HDDIGWSITD
EEIREAGYDP VAHRRFLTQF YTGRVEGSFA EGVPFQENSS TGDARVSGTC ASLAGLGKAI
RNQDPVEIDL AIGRVLLLYG VVMTIGGIPL IYLGDEIGSL NDERYLDDPL RKADSRWIHR
PQFPWEQMQE VADHDTPAAR IHDGILKLGI IRRQNLALRP GKTEFVGTGN DHVLGYFRTH
AQASVLILAN FTEQVEAVEG RILRGLGLRR TVIDQVSGMT ISSGTTLELQ PYQFMILDRQ
GSR