Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plim_3684 |
Symbol | |
ID | 9140402 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Planctomyces limnophilus DSM 3776 |
Kingdom | Bacteria |
Replicon accession | NC_014148 |
Strand | + |
Start bp | 4739781 |
End bp | 4741772 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | |
Product | alpha amylase catalytic region |
Protein accession | YP_003631695 |
Protein GI | 296123917 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCATCGC TACCAGAAGC TTCTCTCCCT CATCGTTCAA CATCAGCACC ACTCTCCGAT GGAGAATTGC GTAAGCTGAA ACTGCGACTC ATTGACCGCA TGCAGCGCCG ATTCGGAGGC GACTTTCCCG ATGGCGACTG GGATCTTCTC GAACGTCGTC TGCAAGAACA GCACCAGCTC CTATTTCAAA GTTTCTACCA GCTCTACGGC GACCGCTTTG ATTCGTTCTA CCATCTCGAA GAACTGATGG CTGTCGTCTT TCGTTCGGTT CTTGAGCGAC CTGCAGAACT CAAGGCGTTC GACGCTTTGC GAGAATCGGA TAAAGACTGG TATCTGGCAC CACGACTCAT GGGAGCCATG TGCTATGTCG ATCTCTTCGC GGGAACGCTG CGAAATCTTG AAGCCAAAAT TCCCTATCTG ATTGAACTGG GAATTACCTA TCTTCACTTA ATGCCTATTT ATAAAGTTCA TTCGACCGAT TGCGATGGAG GGTATGCCGT CAGCGATTAT CGCACGATCA ATCCCAGGTT CGGGACAATG GAAGATCTGG AGCATCTGGC AACGCAACTG CGCCGCCATG GGATTTCTCT CGTGCTTGAT TTCGTGTTCA ACCATACTTC CGATGAGCAT CAATGGGCCC AACGAGCATT GAATGGCGAA CGCGACTATC AGGATTATTA TCTCTTCTTC AAAGATCGGG TTTTACCCGA TCAATACGAA CGGACTTTAG TTGAAGTCTT TCCCGAGGAG CATCCCGGTG CATTCACATA TCAGACAGCA CTCGGCCAAT GGGTCTGGAC AACGTTTTAT ACTTCTCAAT GGGATCTCAA TTATCGCAAC CCCGAAGTGC TGGTGCGAAT GCTGGACGAA CTCCTGTTCC TTGCCAATCG AGGCGTCGAA ATCGTTCGTC TGGATGCCAT TGCATTTATC TGGAAGGAAT TAGGAACCAA CTGCCAGAAT CTCCCTCAGG CGCATACGAT CGTCAGTGTG CTCAATGCTG CCACGCAAAT TGCAGCACCT GCTGTGGTCT TCAAGTCCGA AGCGATTGTG CATCCTGATG AAGTCCGTAC TTATATTCAT CGTGCGGAAT GCGTTCTCAG TTACAATCCG GAACTGATGG CACTTCTTTG GGAATCGTTG GCGACCCGAA ATATCCGCAC GTTACTCGCT TCTGTCAGAA AAAGATTTCC TCTCCCGGAC GGTTGTGTCT GGGTGAACTA TATAAGAAGC CATGATGATA TTGGCTGGTC GATCACCGAC GAAGAAATCC GCGAGGCAGG CTATGACCCG GTTGCCCATC GACGATTTCT CACGCAGTTT TATACAGGTC GGGTCGAAGG TAGTTTTGCT GAAGGTGTCC CCTTTCAGGA GAATTCGAGT ACAGGTGATG CCCGTGTTTC CGGGACATGT GCCTCATTAG CCGGTCTGGG AAAAGCCATT CGCAATCAGG ATCCTGTCGA AATCGATCTC GCAATTGGCA GAGTGTTGCT GCTATATGGT GTCGTCATGA CCATTGGTGG TATTCCGCTG ATCTATTTAG GAGACGAGAT CGGTTCGTTG AATGATGAAA GGTATTTAGA CGATCCATTA AGAAAAGCGG ATTCGCGTTG GATTCACAGG CCGCAATTCC CGTGGGAGCA GATGCAGGAG GTGGCCGATC ATGATACTCC GGCTGCCCGC ATTCATGACG GCATTCTGAA ACTGGGGATC ATCAGGCGAC AGAATCTGGC CCTGCGCCCC GGGAAAACGG AGTTTGTAGG GACAGGCAAC GATCATGTTC TCGGTTACTT CCGCACGCAT GCACAGGCCA GCGTACTGAT ACTTGCGAAC TTCACAGAGC AGGTTGAAGC GGTGGAAGGC CGTATTCTTC GCGGATTAGG CTTACGGCGG ACAGTCATCG ATCAGGTTTC AGGGATGACA ATCTCTTCAG GAACGACGTT GGAACTCCAG CCGTATCAGT TCATGATTCT TGACCGTCAA GGAAGTCGAT AA
|
Protein sequence | MSSLPEASLP HRSTSAPLSD GELRKLKLRL IDRMQRRFGG DFPDGDWDLL ERRLQEQHQL LFQSFYQLYG DRFDSFYHLE ELMAVVFRSV LERPAELKAF DALRESDKDW YLAPRLMGAM CYVDLFAGTL RNLEAKIPYL IELGITYLHL MPIYKVHSTD CDGGYAVSDY RTINPRFGTM EDLEHLATQL RRHGISLVLD FVFNHTSDEH QWAQRALNGE RDYQDYYLFF KDRVLPDQYE RTLVEVFPEE HPGAFTYQTA LGQWVWTTFY TSQWDLNYRN PEVLVRMLDE LLFLANRGVE IVRLDAIAFI WKELGTNCQN LPQAHTIVSV LNAATQIAAP AVVFKSEAIV HPDEVRTYIH RAECVLSYNP ELMALLWESL ATRNIRTLLA SVRKRFPLPD GCVWVNYIRS HDDIGWSITD EEIREAGYDP VAHRRFLTQF YTGRVEGSFA EGVPFQENSS TGDARVSGTC ASLAGLGKAI RNQDPVEIDL AIGRVLLLYG VVMTIGGIPL IYLGDEIGSL NDERYLDDPL RKADSRWIHR PQFPWEQMQE VADHDTPAAR IHDGILKLGI IRRQNLALRP GKTEFVGTGN DHVLGYFRTH AQASVLILAN FTEQVEAVEG RILRGLGLRR TVIDQVSGMT ISSGTTLELQ PYQFMILDRQ GSR
|
| |