| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3354 |
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| Symbol | |
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| ID | 9140070 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Planctomyces limnophilus DSM 3776 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_014148 |
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| Strand | + |
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| Start bp | 4339882 |
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| End bp | 4342731 |
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| Gene Length | 2850 bp |
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| Protein Length | 949 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_003631366 |
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| Protein GI | 296123588 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.129788 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGTCACC ACCCTCGGTA TCTGCTGTTG CTGTCAGTTC GCAGGCTTGT CGTGCTGCTG
CCTGTATTAC TGACGTTGAT TAGCGCACGA CAGGAAGTGA GTGCCGCTGG TGATGTGGTT
CCGGCGAATC GCAAAGCTCG AGCCGTAGCT GGGAACGTGA TCCTGGTTCA GAATGAAATA
CCGCAGCGTA GCAACAGTGC AGCTACCCCC AGCCAACCCG CTGCACCGGC CAGTGAGATC
AAATCGATCA ACACCGAAGA AGAGATCCGC AAACTGCTGG AGAGCTGGGC ACAGCGTGAA
GCATGGGATC GCCCATCGTT TTTCGATCCA CCACGACCAG TGGCGGAGGC GACGTCCTTT
CAGAAACAGA TTGTTCCCCT CGTTGAGATG GCCAATTATG GCTGGTGGAA CGATGGAACC
GGCCTGATGC GCTATCTGGC AGTCAATGTT TCGATCTACA ACGGCGGTGC CGAGCCAATT
GTCATTCGAA AAGACGATGT CAGTGCCAAT ATTGGAGGAA AGGATTACCC GTTTGGTAAT
CTCCCGCAGC GATTGAAGCT CATGCAGTTC CAGTACGAAG AGAAATCGAT TTCTCTCAAA
GGGGCTGAAC CATTTGCAGA GTTGAGCATC GCTCCCGGAA CAGCCAGCAA TGTCTGGCTG
GTGTTCGCCA AACTGGAAAC AGACAACAAT GTTCCTCCCA GCGTCATTAC GATGAAGTCG
TCGGCTGGCC CCGTTGTGAT TGATGTCAAT CGGCAGATGA GGTCGGCTTT GAAGCTCCGG
ATCGAACTGG TGGGCCCGCG TGCTGTCCTG GGGCTGATGA CGATTTCGGG GATTCTGAAT
ACCGTCAATG CTCAGGATTT GTGCCGGGGT TATGAAGAGC TGTCGCTGAA GAAGGTCGAG
CGGGCCGTTA CCTGTTGGGA TCTCAGTGTG AAGCAGGTCA ACTCGCAGCT GCTGAGCTGG
CTGATGACCA CGGCCCAGCA ACCACCAGGG AACCGACCAC AGATCAATTA TCTGCCGGAA
GTTCCTGCCG CCATTCAGGA ACTTCAACTG GCAAGCATCC CCAACCAGCG TGATCAGTCG
AAGCGTGGGA ATAGTTCCAA AGTCGTGCAT CCCACGGCAG CCGATGCGAT CTCTGCAGCG
CTGGCCGATG CTTATCGACT TTTACCTGCC GATGAAATTC TGCGTGAGAT CGAGAGTGGA
CATCCTCTGG CGAAACCAGC CGCCCTGCTG CATGGGGCGG CTCGATTGCC CTCTTCGGAA
GTACCGCGTG TGATTGCACT GACACGCAGT GAGGATCAGC CACTGGCCAA GTCGGCAGTG
CTGGCTTTGG GAGAATTCAG CGAGCAACCA GCGATTGATG AGCTGAAAGC GATTATCACC
AGTGGAAAGC TGGAACTCGT GCCGGATGCT GCCGAGGCTT TAGCCACGTC TCGATATCGC
CAGCATCAGG ATGTCCTGTT GCAGCTATTA AAGGATGTGC AACCTGAGCG TCGAGATCCC
ATATTGACCG TCCTCTCGGC AACACCGAAG GCTGCCTGGG CCAATGTTCT GGCGAACTAT
ACGCATCAGC CTCAGGGAGG AATCAGGACA GAAGTCCTTT CGGCTCTGGT GGTGCTAGGG
CATCCAGCGG CACAAGGACT TCTGGAAGAA GCCATTCGCA GCGATAATGC GACCACACGG
AAGTTTGCCT TCGATGTCCT CTCTCGCCGA TCCGATCGCA AAAGCCGGGA ACTGGCGATG
GATTACGCCC TCGCTTCGCT CGATCGAGGA GAGTTCGATC CCCTGCTCGA ACAGTTTTTG
AGACAGGTGC GCGATCCGCG CGTGCTGCCG AAATTGATGG CCCGGCTCGA TAACTCCAGT
ACAAACTCAA CTGCCGATCG TTCCGGAGCC ATTCGACTCA TTGGTGCGAT TGCGGATGCT
TCGGCCGGTA AGGAACTGGC CGATCGATTT GATTCGTTCA AGCCACAAGA ACGCAATCAG
CTCATGTTGG CCTTGAGAGA ACTCAAGGCA CCCGAGTTCT TGCCCCTGGC GATTCGCTGC
ATTGAATCGG GCGACTTTTC GCAGGCTTCG AGTGCACTGC AAGGATTGAT GCAGGAATCT
CCGCCAGATC TGCTGGCGAT ACTTGAAAAA GCGGTTCGCA AGCAGGACAG CAATAACATG
CAGCAGCAGC TGATGCAGAT GATTGGTCAG GTGGGAACAC CGGCTGCACG CGAATTGCTC
CTCAAGCTGC GTGATGAAGC CAAAGACGAT ACTCGCCGCG ACTATGCCAA TGCCGCACTA
TTAAATCTGC GGCAAAGGTC GCCCGGCTAC CAGTTCATTT ATCAGGCCCA GCATTATCTC
CAGCAGAAGC AGAAAAAATC GGCCCTGGAG TGCTTTGAGA TTGCTTTGGA AGTCGATGAG
TATCTGCCAG AGGCGTGGGC AGGTCGTGGA AACCTGCGGT TGCAGGAGGG CAAGATTCCC
GAAGCGCGGG GCGATTTTGA GAAGTCGGTA GCACTCGACC CGACGAATGC GCTGGCAGTC
ACGGGGTATG CCATCTGCCT GGTCACAACA GGTGAGACAG ACAAGGGAAT CAGCACACTG
GAGAAGATTC GCACCAAGCA TCAGCAGGAT GATCAATACC TCTACAATGC CGCTTGCGTT
TACAGCCGGG CGATGGAGCA TACGATGAAG ACTATGGCGG GAGAAGAGGT GATCAACCGC
TACAAGGGGC TGGCACTCAA AGACCTGAAG GCGAGTATTG AGCGCGGTTT TGATGACTTC
GACTGGGTGA AAAAAGACCC GGATTTAAAG CCATTAGAAA ACGACCCCGA ATTCAAAGCC
CTCCTGGAGA AAGCCCCGAA GAAAGAGTGA
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| Protein sequence | MCHHPRYLLL LSVRRLVVLL PVLLTLISAR QEVSAAGDVV PANRKARAVA GNVILVQNEI
PQRSNSAATP SQPAAPASEI KSINTEEEIR KLLESWAQRE AWDRPSFFDP PRPVAEATSF
QKQIVPLVEM ANYGWWNDGT GLMRYLAVNV SIYNGGAEPI VIRKDDVSAN IGGKDYPFGN
LPQRLKLMQF QYEEKSISLK GAEPFAELSI APGTASNVWL VFAKLETDNN VPPSVITMKS
SAGPVVIDVN RQMRSALKLR IELVGPRAVL GLMTISGILN TVNAQDLCRG YEELSLKKVE
RAVTCWDLSV KQVNSQLLSW LMTTAQQPPG NRPQINYLPE VPAAIQELQL ASIPNQRDQS
KRGNSSKVVH PTAADAISAA LADAYRLLPA DEILREIESG HPLAKPAALL HGAARLPSSE
VPRVIALTRS EDQPLAKSAV LALGEFSEQP AIDELKAIIT SGKLELVPDA AEALATSRYR
QHQDVLLQLL KDVQPERRDP ILTVLSATPK AAWANVLANY THQPQGGIRT EVLSALVVLG
HPAAQGLLEE AIRSDNATTR KFAFDVLSRR SDRKSRELAM DYALASLDRG EFDPLLEQFL
RQVRDPRVLP KLMARLDNSS TNSTADRSGA IRLIGAIADA SAGKELADRF DSFKPQERNQ
LMLALRELKA PEFLPLAIRC IESGDFSQAS SALQGLMQES PPDLLAILEK AVRKQDSNNM
QQQLMQMIGQ VGTPAARELL LKLRDEAKDD TRRDYANAAL LNLRQRSPGY QFIYQAQHYL
QQKQKKSALE CFEIALEVDE YLPEAWAGRG NLRLQEGKIP EARGDFEKSV ALDPTNALAV
TGYAICLVTT GETDKGISTL EKIRTKHQQD DQYLYNAACV YSRAMEHTMK TMAGEEVINR
YKGLALKDLK ASIERGFDDF DWVKKDPDLK PLENDPEFKA LLEKAPKKE
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