Gene Plim_3244 details

Gene Information

• Locus tag: Plim_3244
• ID: 9139959
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 4195108
• End bp: 4197207
• Gene Length: 2100 bp
• Protein Length: 699 aa
• Translation table: 11
• GC content: 52%
• Product: Tetratricopeptide TPR_2 repeat protein
• Protein accession: YP_003631257
• Protein GI: 296123479

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCAGAATT CATTTCTGGA TATCACGAGA TGTCTGGAGG AATTTCTTGT TCGGATTCCA 
GTATTCAACT GCGTTCCTTG GTATGGGGTG GCTGGGGTTG AGCGTCCTCG CGAACCCCCA 
GATAGTGCCG AAAATCGCTG GGGGGTCGAA GACTCAACCC CAGCCACCCG CCGCGCAGTT 
GTTTCTTGGA ATCTGTATTG TTCGACCAGG CTTTCCACTT CGTTTGTTCC AATGCTCGGT 
TCGAAACCCC AGAGTGTGTC GGCTTCGATG TCCAATCTAT TCCCACGACT TCTGATTCTG 
CTGGCGGGAA TCGCTGCTTA TCTCGTCGGG CTGGCGGCAG ATTTCACGTT TGATGGTGTC 
GAATTTGTCG CGAATAATCA GGTTCTCGAC AGGCTCTGGC CGCCGGAATA CTTATCAAAG 
TACACCCGGC CATTCAGTTT TTTAACATTC GCGATCAATA AGGTTTGCTT CGGGCCGGCA 
CCATTCAGCT TCGCACTCAC GAACATCCTC ATTCATATCG CCTCGGCGCA GATTTTGTAT 
TCCTTTGTCA AGATTGTGCT CGAAAAAGCC CCTCGGATTC CTGAGTCCCT TTCGAGAGCG 
GCAGTACCCA TCGCGCTGGT CTCCAGCCTG TTGTGGGTCG TTCATCCGCT GAACTCCCAG 
GGAGTGGCTT ATCTCATTCA AAGGCAGGAA TCCCTGGCCA GTCTGTTTTA TCTTGGAACG 
ATGGCCGCGT TTGCCTCTGC CGTACTCCAT CAGCAGCGTT CCTGGTATCT CGTCGCCTGC 
ATCAGTTGCG CGCTGGGAAT GTTTTCCAAA GAGATTCTGG TGACAGCCCC CTTATGTGTT 
CTGTGGCTCG ATCTGGCTGT GCTGTCAAAA TCCTGGCGCG AAGTGACTCG CCGCTGGTAT 
TGGCATCTGG CCCTCTGGCT GACGCTGGGT CTGCTCGCTC TGGTGATGTT ATCGCATCAG 
GGGGAGTATG CTCAGGCAGG CATTGGAGAT GTTCCGGATG TTTCGCGCTG GCAATACTTT 
CGATCACAAC CCTGGGTCGT AGCGACATAC GTGAAACTCT GGTTCTGGCC CACAGGGCAA 
TGTGCCGACG CCCTGCTGAT TCCCATCAAC AATCCGGCGA TCTACTGGCC TGGTCTCGTC 
ATTGCAAGCC TCTGTCTGAT CATCCTGTGG CGAATGAGCT TCCATCGCCC GGCACTTGGT 
TTTCTATTGG GAGCCTGGCT GCTCGTACTA CTTCCTACCA GCTCCATCGT CCCGATCCAG 
GATCTTTACT TCGAACACCG GATGTACCTA CCCAGCATGT TCCTGGCTGT TGCCACGACT 
CTCATGCTGA AACGATTGAC AGATCGTTGG CAATTCAAAT CTCAGGCACT TCGCTGGGGT 
CTCGTAGGGA GCATGATCTG CTTGCTGATT TTGATCAACA ATTATCGCTG CACCGTCTAT 
TTAAGCGACG AGGCTTTCTG GCGAGATGTG ATTGCGAAGT CACCGAATAA CAGCCGGGCC 
TATACCAATC TGGCACTTCA GATCGTGAAG CGGGCATCCA GAGAGAGTGC ATCTCTCGAT 
AAACAGAAGG TGCTGGAAGA AGCGATTGTG ATGGCGCGAC GATCATTTGA AATTCATCCC 
CTCAATGCTG TCAGCTATCA AAATCTGGCC TTTGTGTTAG GGGAAGCGAA TCGTAAGGAG 
GAAGGAGAAA AATATGTGCA GATGGCCCGC ATTCTGAAGA CCAGAATGAC TCAACAGGAA 
CTGCTTGATT TTGGAAATTC CAATCGAGCG ACCGAACCCG AGTTAGCACT CTTCTGCTAC 
GAAAGAGCTA GGGAACTCCC TCCGGAGTCG AGCGAGGTTT ACAACAACCT CGGGATTCTC 
ACCCAGCAGG TCGAAAAGAA TTTTGTGAAA GCGGAGGTCT GCTTTCAGAA GTCACTCTCC 
ATTAACCCCA ATAATCCGAA TACCTACAAT AGCTATGGCA ATCTGCTCGT GCGGACGAAG 
CGCTATCAGG AAGCGGTCGC GGCTTTCGAA AAAGCACTCC GGCTGGACCC GCAACTGAAG 
TCAGCAGTTC AAGGCCGCGA AGTGGCGATA CGCCTGCTGA CACAGTCACA GAATAAGTAG 

 

Protein sequence

MQNSFLDITR CLEEFLVRIP VFNCVPWYGV AGVERPREPP DSAENRWGVE DSTPATRRAV 
VSWNLYCSTR LSTSFVPMLG SKPQSVSASM SNLFPRLLIL LAGIAAYLVG LAADFTFDGV 
EFVANNQVLD RLWPPEYLSK YTRPFSFLTF AINKVCFGPA PFSFALTNIL IHIASAQILY 
SFVKIVLEKA PRIPESLSRA AVPIALVSSL LWVVHPLNSQ GVAYLIQRQE SLASLFYLGT 
MAAFASAVLH QQRSWYLVAC ISCALGMFSK EILVTAPLCV LWLDLAVLSK SWREVTRRWY 
WHLALWLTLG LLALVMLSHQ GEYAQAGIGD VPDVSRWQYF RSQPWVVATY VKLWFWPTGQ 
CADALLIPIN NPAIYWPGLV IASLCLIILW RMSFHRPALG FLLGAWLLVL LPTSSIVPIQ 
DLYFEHRMYL PSMFLAVATT LMLKRLTDRW QFKSQALRWG LVGSMICLLI LINNYRCTVY 
LSDEAFWRDV IAKSPNNSRA YTNLALQIVK RASRESASLD KQKVLEEAIV MARRSFEIHP 
LNAVSYQNLA FVLGEANRKE EGEKYVQMAR ILKTRMTQQE LLDFGNSNRA TEPELALFCY 
ERARELPPES SEVYNNLGIL TQQVEKNFVK AEVCFQKSLS INPNNPNTYN SYGNLLVRTK 
RYQEAVAAFE KALRLDPQLK SAVQGREVAI RLLTQSQNK