| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3118 |
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| Symbol | |
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| ID | 9139832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Planctomyces limnophilus DSM 3776 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_014148 |
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| Strand | - |
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| Start bp | 4037357 |
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| End bp | 4038655 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | |
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| Product | tRNA pseudouridine synthase D TruD |
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| Protein accession | YP_003631132 |
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| Protein GI | 296123354 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.709417 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGTCGT TATACTGTTG TCGTTCATTG GAACCAACGA CGCTTTTGCC CACTCCAGCT
GTGGCTGCAC GCATGAAATT GAAGTGCCTC CCCGAAGATT TCCAGGTTGA AGAACTGAGT
GAGTTTGAGA TTCAGGGCGG TAATTATGCC GTCTATAAAC TTACGAAGAC ATCGCTGGGA
ACTCCCGAAG CCATCGAAGC GATTTTGCGC CGATGGAAAA TCAAGCGAGA GCACATCAGT
TATGGTGGTC TCAAAGATCG TCATGCGATT ACCCAGCAAT ATGTGACGAT CAGTCGTGGT
CCTAGGCGGG ATTTGAATCA GCAGAACTTT ACGCTGGTTT ATCAGGGGCA GACGAAGCAG
CACTTTGGCC CGACCGATAT TTCCGGCAAT CGCTTTCACA TTGTCATTCG CGATCTGCCT
CGGAATGTGG CTCAAAAGTA TGTGAATCTG CGGGAATCGC TGCTGGTCGA TCGGCTGCCG
AATTATTTTG ATGATCAGCG ATTTGGCTCG CTCGGTGCGT CGCGGGAGTT TATTGCTCAG
CCTTGGTGCG CAGGGAATTA CGAGCGAGCG TTATGGCTGG CACTGGCCGA ACCGAATCCG
CATGATCGGC CTGATGATCG CGAAGAAAAG CGTATTCTTC GCGACAACTG GGGCAACTGG
GTCGATTGCA AAGCCAAGCT GGCCCAGTCG TCGCGTCGCA GTATTGTGAC TTACCTGTGT
GATCATCCCA CTAACTTCAA GAATGCTTTC GCACTCATTC GTGTCGATTT GCGAGGGTTG
TTTCTGTCGG CTTACCAGAG CTATTTGTGG AATCATATTC TGGCAGAATT GATTCGCAGT
AAGGTCTGGC ATGAGCGGGT TTACGAAGTG GGTCTTTCGG CTCAGCAGGT CGCCTTCTGC
ACGTCGTTGA CGATGGAAGA GCAGGACGAA CTGTCACGAG TCAAACTCCC TTTGCCTTCC
GCACGGATTG ATCTGGAAGG ATCGGCTCTC GAAGCGCATT ATGAGAATGT TCTGCGGGAA
CTGGGGATTG AGTTACGCGA ACTGCGGGTG AAGTATCCGC GGGACAGTTT CTTCTCCAAG
GGAGAAAGGC CGGCGCTCAT TGTGCCACAT AATCTGCAGA TGGCGATGGC CAGTGATGAG
CAGTATGCAG GTCGATACAA AGTGACGTGT GACTTTGAGT TGCCGCGTGG TTCGTATGCG
ACGATTGTGC TCAAGCGATT GACCCTCGAC CCGACGGCTG TGAGTGAGCG CACACACGAG
GCAGCCGGGA GTTCGGTCGC TGTGGCTGAA GAGGACTAA
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| Protein sequence | MRSLYCCRSL EPTTLLPTPA VAARMKLKCL PEDFQVEELS EFEIQGGNYA VYKLTKTSLG
TPEAIEAILR RWKIKREHIS YGGLKDRHAI TQQYVTISRG PRRDLNQQNF TLVYQGQTKQ
HFGPTDISGN RFHIVIRDLP RNVAQKYVNL RESLLVDRLP NYFDDQRFGS LGASREFIAQ
PWCAGNYERA LWLALAEPNP HDRPDDREEK RILRDNWGNW VDCKAKLAQS SRRSIVTYLC
DHPTNFKNAF ALIRVDLRGL FLSAYQSYLW NHILAELIRS KVWHERVYEV GLSAQQVAFC
TSLTMEEQDE LSRVKLPLPS ARIDLEGSAL EAHYENVLRE LGIELRELRV KYPRDSFFSK
GERPALIVPH NLQMAMASDE QYAGRYKVTC DFELPRGSYA TIVLKRLTLD PTAVSERTHE
AAGSSVAVAE ED
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