Gene Plim_2844 details

Gene Information

• Locus tag: Plim_2844
• ID: 9139556
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: -
• Start bp: 3682259
• End bp: 3684382
• Gene Length: 2124 bp
• Protein Length: 707 aa
• Translation table: 11
• GC content: 55%
• Product: DNA ligase, NAD-dependent
• Protein accession: YP_003630865
• Protein GI: 296123087

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.764742
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTGGGACT CGATGAGTAT CGCAGAACTC CTGGCCAGAC CATTGCCGAC ATCAGCAGAT 
CAGGCCCGAC ATCTTCTCGA CAAATTGCGG CAGGAAATCC GCCGGCACGA CCGGCTGTAT 
TACGTGCTGG CCCAGAATGA GATCAGCGAT CTCGAATACG ACCGGCTGAT GGCTCGCCTC 
CTTGAAGTAG AAGCCGCCTT TCCCGAGTTA ACGACCGCCG ACAGCCCATC GCAAAAAGTG 
GGTGGCGAAC CCATCGAAGG GTTTGTCCAG GTCGCACACT CCGTTCCCAT GCTTTCGATT 
GATAACGTCT ACGACGAATC CGGCCTGCTG GAATTTGGCC AGAAGGTTTC CCGCCGCGCC 
AGTGAAGTTG GCTGGAAAGG CCCCATGGAA TGGCTGGCCG AGTTCAAAGT CGATGGCGTC 
GCTCTCTCGT TGATCTATGA GGAGGGCAAA CTCATCCGTG CTGTCACGCG TGGCGATGGC 
CGTGTCGGAG ACGACGTCAC CCATAATGCA AAGACGATTA AAGGCGTGCC GCTGTTCCTG 
GAGGATGGCT CGTCGAAAAA ATCGCTCTTT GCCGAATCGA ATATCCCGCG ATTGCTCGAA 
GTTCGTGGTG AGGCCTATAT CGGCAATCAG GATTTCGCCA AAGTTCGTGC TCATCAACTG 
GAGCGTGGAG AAGAACCCTT TAAGAACAGC CGCAATGCCA CGGCAGGGTC ACTCAAACTG 
CTCGATCCGA AGTTGTGTGC CCAAAGGCAG CTGCGATTCT TTGCCCACTC GCTGGGAGCC 
ATCGACGAGC AGGAGGCCAC TCGATTCAAG ACCCATGCCG ATTATCTGGA GCTCTTTTAT 
CAGGTGGGAT TGCCGACTGT CCCCATGACG GCCTGCCATC CATCCTTCGA AGCAGCGGTT 
GCTGCCTCTC CAACCATGAT GGAAGCGCTC TCGACACTTG ATTTTGAAGT CGATGGACTC 
GTCTTCAAAG TCAACAATCT GGCTCTACGG GCGGAACTGG GAATGACCAG CAAAAGCCCG 
CGCTGGATTG TCGCCTATAA GTGGGAACGC TATGAGGCCG CCACCAAGGT CCTTAACATC 
ACTGTGCAGG TCGGGAAAAC AGGCGTATTG ACGCCAGTCG CCGATCTCGA ACCTGTCGAG 
ATTGCAGGGA CCACCGTTTC GCGGTCGAGT CTGCACAATC GCGATGAAAT TGAGCGGTTG 
GGTCTTGGCG TGGGCGATAC GGTGATTGTC GAAAAGGCCG GCAAGATCAT TCCCCACATT 
GTTCGCGTGG AGGAACATCT TCGGCCCACA AATACAGCTC CCTATAGATT TCCCGAGACT 
TGCCCCGAAT GTTCCACAAT CGTCGAGCAG GATGAAGGGG GCGTTTACAT TCGCTGCCCG 
AACATCAATT GCCCGGCCCG CTTTCGCGAA TCCCTCAGAT ACTTCGCTTC CCGCCAGGCG 
ATGGATATTG AAGGCCTGGG AACAAAGCTG GTCGAGCAAC TGGTTTCCAG TCGTTTGGTG 
CAGAGCATCA GCGATCTCTA TCGCCTCGTT GATAAACGAG CCGAACTGCT TGAGCTCGAA 
AGACTCGGTG AGAAATCGGT CGATTCACTC CTGGCAGGAT TGGAAGCTTC TCGTCAACAA 
CCCCTCTGGC GATTGCTCAC GGCACTCAAT ATCCGACATG TCGGGCAGCG GACTGCACAA 
ATTCTGGCCG AACGATTTGG TTCGATGGAT CGATTATCTG CTCAGACAAT CGAAGAGCTT 
TCGGCCACTC CCGAAGTGGG CGAAGTCATC GCGCAATCGG TGCATCATTT CTTCCACACC 
GAGTACGGCT CGAAGCTGAT TGAGGAACTA AAAAATCTGG GGCTGAATCT CGGCACTGAA 
AGCGAACAGA AACAAATCGC TGCAACAGAA GGAGTACTAT CAGGGAAGAC GTTTGTGGTT 
ACCGGTACAT TGCCCTCCAT GGGCCGGGAG GAGATTGAAG AACTGATTCG TCTTCACGGC 
GGACACGCAG CGAGCAGTGT CTCGAAGAAG ACCAGCTTCG TCGTGGCTGG TGAGAATGCC 
GGGAGCAAAC TGACCAAGGC CCAATCACTG GGAGTGCCAG TCATTAATGA AGCCGAATTC 
ATGAAACTCA TTGGCAAGGC TTGA 

 

Protein sequence

MWDSMSIAEL LARPLPTSAD QARHLLDKLR QEIRRHDRLY YVLAQNEISD LEYDRLMARL 
LEVEAAFPEL TTADSPSQKV GGEPIEGFVQ VAHSVPMLSI DNVYDESGLL EFGQKVSRRA 
SEVGWKGPME WLAEFKVDGV ALSLIYEEGK LIRAVTRGDG RVGDDVTHNA KTIKGVPLFL 
EDGSSKKSLF AESNIPRLLE VRGEAYIGNQ DFAKVRAHQL ERGEEPFKNS RNATAGSLKL 
LDPKLCAQRQ LRFFAHSLGA IDEQEATRFK THADYLELFY QVGLPTVPMT ACHPSFEAAV 
AASPTMMEAL STLDFEVDGL VFKVNNLALR AELGMTSKSP RWIVAYKWER YEAATKVLNI 
TVQVGKTGVL TPVADLEPVE IAGTTVSRSS LHNRDEIERL GLGVGDTVIV EKAGKIIPHI 
VRVEEHLRPT NTAPYRFPET CPECSTIVEQ DEGGVYIRCP NINCPARFRE SLRYFASRQA 
MDIEGLGTKL VEQLVSSRLV QSISDLYRLV DKRAELLELE RLGEKSVDSL LAGLEASRQQ 
PLWRLLTALN IRHVGQRTAQ ILAERFGSMD RLSAQTIEEL SATPEVGEVI AQSVHHFFHT 
EYGSKLIEEL KNLGLNLGTE SEQKQIAATE GVLSGKTFVV TGTLPSMGRE EIEELIRLHG 
GHAASSVSKK TSFVVAGENA GSKLTKAQSL GVPVINEAEF MKLIGKA