Gene Plim_2805 details

Gene Information

• Locus tag: Plim_2805
• ID: 9139517
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 3642418
• End bp: 3644475
• Gene Length: 2058 bp
• Protein Length: 685 aa
• Translation table: 11
• GC content: 53%
• Product: outer membrane efflux protein
• Protein accession: YP_003630826
• Protein GI: 296123048

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.977623
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGTGGC AACGTTGGAA AAAATCGATC GCATTGGCTT TGACGGCAGT TCTACTGCCA 
GGTTGCTCAG GAACAAACAG AAATGTTTCG TATCTGGGTG ATGCAGAGCT GAACTACTAC 
AAGAACGCTT CGCTGACGAC CGAGTACGCT GCGGTTGATC AGGCGACTCC GCTTGATATC 
GTCAATTCGG ATCGTCCGCG AACGATTCGG GATCGTACTC AGGACGAAAT CTGGGATCTC 
TCCTTGATGG AGTCGATCCA CATGTCCATT GCCAATAACA AGATGATTCG AACCAGGGCA 
CAGTTCCTTG CTCAGAGTCA ACTGCTGGTG AACCCGGCTC TGGCACCTTC GATTTATGAC 
CCTGCTTTGA GGCAGACTGG CTTCCTCTTT GGCACACGTG GTGTCGAAGC AGCACTGGCT 
GACTTCGATA CTCAGTTCAC CAGTTCGATG CTCTGGGGAC GTAACGAAAC CATTGCCAAC 
AGTTCCTTCG GAACTTCCCC GCTGTTCGGA CTTTCCCAGG AAACCGGTAA TTTTAATGCG 
GCTTTGCAGA AGACGATGGC GAATGGTGGC ACCGTCACTT TAAACCACAG TATGAATTAC 
CTGGGGACCA ATCAGCCCTT CACCACGTAT CCATCGAGTT ATACGGGTTC GGCGAATATT 
AACTACACGC TCCCCTTGTG GGGTGGTTCG GGCGTGGAAT ACACACGCAT TGCCGGGCCG 
AGTGGTGGTG GTTTAGGCGC GATTACCGGT GTTTCTCAAG GTGTGGTCAT TGCCCGCATT 
AACGAAGATA TCGCTCTGGC CGATTTCGAA AACTCCGTGA TCAATATGGT CAGGGATGTG 
GAAGATCTGT ATTGGGATCT GTACCTGGCT TACCGGCAGT ACGATGCCGA TGTGGCCAAC 
CGCGACAGCT CACTCCGATC ATGGCGGGAA GTGAAAGCGC GGATGGAAGT CGGTGCAACG 
GGTGGTAACG CTGCTGCCGA AGCCCAGGCC CGCGAAAACT ATTTCGATAC TCGCGCCCGT 
GTCGAGAACT CACTGGCCAG TATTTATGAT CTCGAAAACC AGTTCCGCCG CCTGATTGGC 
CTGGGTGTGA ATGATGGCCG CATCATCCGG CCTGCCGACA GTCCCGTCGA AGGTGAGTAT 
CTCGTCAACT GGGAAACCAG CCTGACAGAA GCATTGGTTC GCCGTGTCGA ATTGCGTCGG 
CAGAAGTGGC AGATCAAGAG TCTGGAACTG CAGACCATTG CCGCCAAGAG CCTGACGAAT 
CCTCAATTGA ATTTTGTGTC TCAGTATGGC CTGAATGCTT TTGGAAACAA ACTCATCTCT 
GAGCAGACGT CCAACTACAA CAGTGCCTAC GGAACCATGA AAGATCGGGA TCTCGAAAAC 
TGGACCTTGG GCTTTCAGCT CTCCATGCCC ATCGGGTTCC GCCAGGCTTA TGCCCAGTTG 
CGGAACACCG AACTGCAACT GACCAAGGCC CGTGCGGCAC TGGCCACTCA GGAACAGGAT 
ATTTCTCATG AGTTGGCAAA CGCGATTCAA AAACTCGAAA CAGCGTTTGT GACCGCCCGT 
ACAAACCTCG ATCGGCGTAT TGCTTCAGCC CGCCGGGTAG AAGCCACACA GGCCGAATAT 
GAAGCGGGTG TCCGCGATGC CACACTTGAC CTGGTGCTGC GGGCTCAGGC CAGCCAGGCA 
CTTGCTGAAA TTGCGTTGTT CACCAGTCTG GTCAATTACA ATAAAGCGAT TAACGATCTG 
AACTATCGCA AGGGGACAAT TCTCGACAAT TCGAATATCA GCCTGGGCGA AGGCGAATGG 
ACATACGAAG CCCAGCAGCA GGCACTTCAG AAAGCCTGGG CACGCAGTTA CGCCTTCCGC 
AATCCTTTGC TCAAGGCCAG CCCCGAAGAT TTTTCCTCCC CTGTGCCTTA CCCCAAAACA 
GATCTCACCT GGCAAGGGAT CAATGGGGAT GATGGGTTAA TTCCACAGCC AGCACCAGCC 
GGTGCAACCA TTCCACCAGC ACCTGGGATG GAACAACCAG TGGCACCAGT TGTGCCACCG 
CTAGATGAGA CCCCATAA 

 

Protein sequence

MPWQRWKKSI ALALTAVLLP GCSGTNRNVS YLGDAELNYY KNASLTTEYA AVDQATPLDI 
VNSDRPRTIR DRTQDEIWDL SLMESIHMSI ANNKMIRTRA QFLAQSQLLV NPALAPSIYD 
PALRQTGFLF GTRGVEAALA DFDTQFTSSM LWGRNETIAN SSFGTSPLFG LSQETGNFNA 
ALQKTMANGG TVTLNHSMNY LGTNQPFTTY PSSYTGSANI NYTLPLWGGS GVEYTRIAGP 
SGGGLGAITG VSQGVVIARI NEDIALADFE NSVINMVRDV EDLYWDLYLA YRQYDADVAN 
RDSSLRSWRE VKARMEVGAT GGNAAAEAQA RENYFDTRAR VENSLASIYD LENQFRRLIG 
LGVNDGRIIR PADSPVEGEY LVNWETSLTE ALVRRVELRR QKWQIKSLEL QTIAAKSLTN 
PQLNFVSQYG LNAFGNKLIS EQTSNYNSAY GTMKDRDLEN WTLGFQLSMP IGFRQAYAQL 
RNTELQLTKA RAALATQEQD ISHELANAIQ KLETAFVTAR TNLDRRIASA RRVEATQAEY 
EAGVRDATLD LVLRAQASQA LAEIALFTSL VNYNKAINDL NYRKGTILDN SNISLGEGEW 
TYEAQQQALQ KAWARSYAFR NPLLKASPED FSSPVPYPKT DLTWQGINGD DGLIPQPAPA 
GATIPPAPGM EQPVAPVVPP LDETP