| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_2228 |
|---|
| Symbol | |
|---|
| ID | 9138933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 2869707 |
|---|
| End bp | 2870666 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | Peptidoglycan-binding LysM |
|---|
| Protein accession | YP_003630253 |
|---|
| Protein GI | 296122475 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00208524 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCATCGTG ACCAGAAAAT CGGTCTCGCC CTGGGTGTCC TGCTGATCGG AGCAGTGGCG
GCATTTTTCT TTCGAAACGA ACGCTCAACA ATGGATGGAG TTCCCGTGAT CTCCGACGTT
GTTGAACTGG ATGCTGTGAT TGCCGAGAAG AACTTCAGGC CTTACCTGGG AGATTCCAGC
CGCGCTTCAG ACCGGACGGT CGCCCGTCCC GTCAATGATA CACTCATCAT TCCACCGTTA
AATGATCCGT GGGAAGGATC TGCGTCTGGC AAGATCGAGG CACCGGTAGC GCCGACCGAC
AATCCTAAGC AGGCAATGAA CCGTCCGTCT GACGAAACGA CTCAGGATTT GCCGGCTATT
CCCTGGCCTG ATGATGTGCT GGAAGTGGAG TCCGTTGCGC CAAAACAGAC CGGTAGTTCA
CCATCAGCTA ATGGAACTCA AGGCTTTCGA AGCGAACGCC AGGACCAACG TGGACTGACT
GAGGCCACTG GCGATATGTC GCCTGCCAAT CCAACGGGAA TGGATCGTTA TCAACGATCA
AGTGGTTATC GTCCGGGAGA TGCTGGCAGC TCAGATTCTG AGGCCGTCAC GATGGTGACT
CATGTCGTCA AAAAGGGTGA AACATTATCG TCGCTCTCAC AAAAATACCT GGGACGCGAA
AGTCGTTATC TGGAAATCTT TGATGCCAAT CGAGACCAGT TGCGGGATGC TCATGGCGTG
CGTACCGGAA TGACACTCAA AATCCCTGTC ACCAGGAACT CGAGAAACAT CGCGGAAACT
CCTCGGCAGA CGAGGGACGA TCCTGCATCC CCAGCGCCTG CCAATGGAGA GAAACGATTG
TTTGTGCCCT TCAAGCCGCG TCCTGCCAAC GCCGCCACCT GGGGGCCAAC GACGGAGTTA
CCGGAAGCGG CACCCCGTCG CCTGAGTCAG CAACCACCCG AATCCAGCGT GTTGAGATAA
|
|---|
| Protein sequence | MHRDQKIGLA LGVLLIGAVA AFFFRNERST MDGVPVISDV VELDAVIAEK NFRPYLGDSS
RASDRTVARP VNDTLIIPPL NDPWEGSASG KIEAPVAPTD NPKQAMNRPS DETTQDLPAI
PWPDDVLEVE SVAPKQTGSS PSANGTQGFR SERQDQRGLT EATGDMSPAN PTGMDRYQRS
SGYRPGDAGS SDSEAVTMVT HVVKKGETLS SLSQKYLGRE SRYLEIFDAN RDQLRDAHGV
RTGMTLKIPV TRNSRNIAET PRQTRDDPAS PAPANGEKRL FVPFKPRPAN AATWGPTTEL
PEAAPRRLSQ QPPESSVLR
|
|---|
| |