| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1919 |
|---|
| Symbol | |
|---|
| ID | 9138621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 2504703 |
|---|
| End bp | 2506913 |
|---|
| Gene Length | 2211 bp |
|---|
| Protein Length | 736 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | 4-alpha-glucanotransferase |
|---|
| Protein accession | YP_003629948 |
|---|
| Protein GI | 296122170 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.666088 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTCA GTACCCGTCT GATTCTCGCC ATTCACAATC ACCAGCCGGT TGGTAATTTT
GATCATGTCA TCAGGCACGC CTGTGAGAAG GCTTATTTTC CGTTACTCGA TCTGCTGGAA
GAATTCCCGG AAATTGCAGT TGTCCTGCAT AACTCGGGAA GTCTGATCGA CTGGCTGATG
AAGCATGAGC CCGGTTATAT CGAGCGACTG GCGGCTTTCG TGGACAACGG GCAGATTGAA
TTACTCGGTG GCCCATACTT TGAACCCATT CTGGCCGCAA TTCCCAGGCG AGATCGGGTG
GGGCAAACCG CCAGTTACAA GAAGTTTCTG GAACGACGCT TCGATGCACC CGTGCGTGGT
GCCTGGATCC CTGAACGCGT CTGGGAGCAG TCCTTTGCTG CCGACCTGAT CGATGCGGGT
ATCGAGTACA TTCTGCTCGA TGATGCTCAT TTCCGGGCCG CGGGAATCCG TAATGAAGAG
TTGCATGGCT ACTACTTCAC TGAAGATGCC GGTCGAAAGC TGTGTCTGTT CCCTGGAAGT
GAGCGTTTAC GTTACCTGCT CCCCTATGCA GATCCTCATG AGATCATCGA GCACTGTCGT
CAGGTGGCCG AGAAACATCC GGGAGCTGTG CTGACATTCG GCGACGATGG CGAAAAATTT
GGTGTCTGGC CCGGCTCGTG GGATCACGTT TACACCAATG GCTGGATGCG GCGATTCTTC
ACGGCACTCA GAGAGCAATC GAGCTGGCTG AAGGTGACCA CGATGGATGA AACAGTCCGC
AATGTTTCTC CGCTGGGGCG AACATATCTT CCCGATGGAA GTTATCGCGA GATGATGGAG
TGGGCACTCC CTGCTGAGCG TCAGGTGCAA TACCACGACG CCATGAATGG CTATCGCCAG
CATCACGACT GGCCACAACT GGGTTCATTT GTCAGGGCCG GTTTCTGGCG AAACTTTCTG
GTAAAATATC CCGAAACCAA CGAAATGTAC ACACGCATGC TCGGGGTCAG TCAACGATTA
GCCGAGTACG AAGAACTTTA TGGCGATAAA GAGCACGTGG CGGATCTTCG AGCAGCCCGC
GCGGATCTTT ATCGAGCCCA GTGCAATTGT CCTTACTGGC ATGGTGCCTT TGGCGGTCTC
TACCTGCCCC ATCTGCGTAA TGCCGTCTAC AGCCATCTGA TTGCTGCCGA TCACAAACTC
GACCAGATTG CCGGGAAATC GCATCCGTGG GTGGAGGTAT CGATTGACGA TTACAACTGC
GATTCAAAGT TCGAGATCAG TCTGAAAAGT GACAAACTCA AGGCTTTTCT GGCACCTGCG
CAAGGTGGTC AGATGTATGA ACTTGATGTC ACGGCTGTTC GACATAACCT GCTTTCGACA
TTGAATCGTC GCTTTGAGCC CTATCATCAT AAGATTCGAC AGTGTGCAAG TTCAGCCCAT
GTGACAGAGC ATGGTGGTGG CGTTGATCCC AATGGCGGTG TGAGCTTCAA GCAGGCGGGG
CTGGATCAGA AACTGCAATA CGATCAGTGG GCTCGCAAGT CATTGGTCGA TCACTTTCTG
CAACCAGGGT TGGCTGTCGA ATCTTTCGCC AGCGGCGAAG GGACCGTAGG GGACTTTGCC
CAGGGAGCCT ATAAAGCGAT TGTGCGACGA TCCGATTCCC ATGTGGAAGC GGTCATGACT
CGTGACGGAC ACGTTGGTCC ACATCACGCC ACTGTCCGCA AAATCATTGC GATGAATGAA
TCATGCCCAG GTGAAATTCA GATTCGTTAT GAACTCTCGA ATCTCCCTCT GAATCTGCCA
TTGCACTTTG GCGTGGAGTT CAACTTTGCC GGGCTCGCGG GGTCGGCACC GGATCGCTAC
CTGTACGATG CCGCTGGTCG ATCAATTGGG ACACTCGATT CAACTCACAG TTTGCCCGCG
GGAAAATCGA TGGGTCTTGT CGATGAGTGG CTCGGGATCG ATGTCAATCT GGATACGACG
ATGCCAGCCG AGTTCTGGAT CATGCCAGTA CAAACTGTCA GTCAATCGGA AGGAGGCTTC
GAACTCGTCC ACCAGAGTAC ATCCGTTGTA CCTCATTGGG AGTTCTTTGC TCCGGCTGAT
GGCTGCTGGT CAGTCGATTT GAAACTGTCC ATTGATACTT CAGTGGCCCA TGCTCGAGCA
TTGCATGAAG AAAACGCCAG GCGACCAGTC TCTATGTCAC TGACGGTTTG A
|
|---|
| Protein sequence | MPVSTRLILA IHNHQPVGNF DHVIRHACEK AYFPLLDLLE EFPEIAVVLH NSGSLIDWLM
KHEPGYIERL AAFVDNGQIE LLGGPYFEPI LAAIPRRDRV GQTASYKKFL ERRFDAPVRG
AWIPERVWEQ SFAADLIDAG IEYILLDDAH FRAAGIRNEE LHGYYFTEDA GRKLCLFPGS
ERLRYLLPYA DPHEIIEHCR QVAEKHPGAV LTFGDDGEKF GVWPGSWDHV YTNGWMRRFF
TALREQSSWL KVTTMDETVR NVSPLGRTYL PDGSYREMME WALPAERQVQ YHDAMNGYRQ
HHDWPQLGSF VRAGFWRNFL VKYPETNEMY TRMLGVSQRL AEYEELYGDK EHVADLRAAR
ADLYRAQCNC PYWHGAFGGL YLPHLRNAVY SHLIAADHKL DQIAGKSHPW VEVSIDDYNC
DSKFEISLKS DKLKAFLAPA QGGQMYELDV TAVRHNLLST LNRRFEPYHH KIRQCASSAH
VTEHGGGVDP NGGVSFKQAG LDQKLQYDQW ARKSLVDHFL QPGLAVESFA SGEGTVGDFA
QGAYKAIVRR SDSHVEAVMT RDGHVGPHHA TVRKIIAMNE SCPGEIQIRY ELSNLPLNLP
LHFGVEFNFA GLAGSAPDRY LYDAAGRSIG TLDSTHSLPA GKSMGLVDEW LGIDVNLDTT
MPAEFWIMPV QTVSQSEGGF ELVHQSTSVV PHWEFFAPAD GCWSVDLKLS IDTSVAHARA
LHEENARRPV SMSLTV
|
|---|
| |