Gene Plim_1904 details

Gene Information

• Locus tag: Plim_1904
• ID: 9138606
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: -
• Start bp: 2481617
• End bp: 2483734
• Gene Length: 2118 bp
• Protein Length: 705 aa
• Translation table: 11
• GC content: 53%
• Product: squalene-hopene cyclase
• Protein accession: YP_003629933
• Protein GI: 296122155

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTTCAG GTACTTTTGG TGCGAAACGA GTCGACCTGC TGGCAGCATT CGAACATTCG 
GCACCTGCTG AAAAAACGCG AGAAACCTGT GTGGGATTAC AGACCGCGAT TGCGAGAACT 
CGCCAGTATC TTCTCGATCA GCAACATTCC GAGGGATTCT TCGTTGCTGA GCTTGAAGGA 
GATACGATCC TCGAATCCGA GTACATCCTC CTGCTGGCCT TTCTGAATGA AGGGCAATCG 
CCTGATGCAC AGGCAGCAGC CAGGTATCTG CTGACAAAGC AGAATACAGA TGGCAGTTGG 
AGCAACTTCC CAGGTGGCCC CATCGATGTC AGTTGTGCTG TCAAAGCTTA CCTGGCCTTG 
CGAATTACAG GTCATGCAGC CGATGAACCC GCTTTAATCA GGGCTCGTGA AGCCATTCTG 
CAGGCAGGTG GCGTCGAGCG TGTCAACAGT TTTACGAGAT TCTACCTCGC CATGCTGGGG 
CTTATTCCTT ATTCGCTGTG CCCGGCTGTT CCGCCAGAAG TGGTTCTCTT GCCCGATTGG 
TTCCCGATCA ATCTTTCACA AATGTCAGCA TGGTCGCGGA CGATTGTCGT CCCACTGAGC 
TTGCTTTGGG CCTTTCAACC CGCAGTGGAA TTGAACGACG CGGACGGCCA TCAGATCACC 
ATCGAGGAGT TGTATGCCTC TCCTGAGAAG CAGTTGCCCC GGTTTATTCG CGGTGTGAAT 
CATGAGTCGA ACTCCAACGG CTGGATGAAC TGGAGTCGAT TTTTCTTTCG CGTCGATCAA 
TGCCTGAAGT CCATCGAAAG TTATGGAATC AAACCTTTGC GGTCGCGTGC AGTCCGCAAA 
TGTGTGCAGT GGATCCTGGA TCGGCAGGAG ATGAGCGATG GATTGGGAGC GATCTTTCCT 
CCGATCGTCT GGACGTTGAT CGGGCTTAAG TGTGCCGGGT TTGACGATCA GCATCCAATG 
GTTCAAAAAC AGCGGGACGA ATTGAATCGA CTGATGCTCC GCGAGCAGGA TGCGTTACGC 
CTGCAGCCTT GCTTGTCTCC CGTATGGGAT ACTGCAATTT CGATCATTGC CTTGAGGGAG 
TCGGGAGTCG AGCCAGATCA TCCTGCACTA TCTAAAGCCC GGAACTGGCT GCTGAGTAAA 
GAAGTCCGCC ATGCCGGTGA CTGGTCGAAA GCGCATCCCG AGACCCCTGT CTCCGGATGG 
TATTTCGAGT TCAATAATGA GTTTTATCCC GATGTTGATG ATACCGCGAT GGTGCTGATT 
GCTCTGGCTT CCACATTACC AGAAGAGGCG ACGCCGTTAG CGATTTCCCA TGGAGTTCTT 
CCTGTCCAGA CCGGTTGGAG TGCAGAAAGT ACCTCTCGCG TACAGGCACT CAAGCAACTG 
GAAAATCATC GGCCAGTCTT AGAAGCCATG GGGCGCGGTG TGCAGTGGCT TAAGGCACTT 
CAGTCCAAAG ATGGTGGATG GGGAGCTTTC GATTCGGATA TCAACAAGGA ACTACTGACA 
AAAGTTCCTT TCGCTGACCA TAACGCCATG CTTGATGAGA CGAATGCCGA TATTTCGGCT 
CGCGTCCTCG AAGCGTATGC AGCCGTGGGG ATCAGTTTCA ATGATCCATC TGTGCAAAGA 
GCGCTGGAGT TCATCTGGAA TGATCAGGAG GACGATCATG CCTGGTATGG TCGCTGGGGC 
GTTAACTACA TCTACGGCAC ATGGCAAGTT CTGGTGGGAC TGACTGCCAT TGGTATTTCC 
GCCCATGATC CTCGCTTAGT ACGTGCGGCG GGTTGGCTCA AGAGCAAGCA GCAGGCCTGT 
GGTGGCTGGG GTGAAACTCC CGCCACTTAT GATAATCCGA CCCTCAGGGG ACAAGGCACA 
CCGACTGCCT CACAAACGGC ATGGGCTGTA CTGGGTTTGA TTGCAGCCGG TGAGCAGAAC 
TCGATTGAAT GCCAGCGGGG CGTGGAATTC CTGCTGAAAA CTCAGAAACA TAATGGCACA 
TGGGACGAAG AAGAATTTAC GGGGACAGGC TTTCCCAGGG TCTTCTACCT GCGATACCAC 
TATTACCCCC TCTACTTCCC ACTCATGGCA CTGGGGCGTT TTGCCAGAGC TGGTGGAAGA 
GTAAATTTTG CAGGATGA 

 

Protein sequence

MTSGTFGAKR VDLLAAFEHS APAEKTRETC VGLQTAIART RQYLLDQQHS EGFFVAELEG 
DTILESEYIL LLAFLNEGQS PDAQAAARYL LTKQNTDGSW SNFPGGPIDV SCAVKAYLAL 
RITGHAADEP ALIRAREAIL QAGGVERVNS FTRFYLAMLG LIPYSLCPAV PPEVVLLPDW 
FPINLSQMSA WSRTIVVPLS LLWAFQPAVE LNDADGHQIT IEELYASPEK QLPRFIRGVN 
HESNSNGWMN WSRFFFRVDQ CLKSIESYGI KPLRSRAVRK CVQWILDRQE MSDGLGAIFP 
PIVWTLIGLK CAGFDDQHPM VQKQRDELNR LMLREQDALR LQPCLSPVWD TAISIIALRE 
SGVEPDHPAL SKARNWLLSK EVRHAGDWSK AHPETPVSGW YFEFNNEFYP DVDDTAMVLI 
ALASTLPEEA TPLAISHGVL PVQTGWSAES TSRVQALKQL ENHRPVLEAM GRGVQWLKAL 
QSKDGGWGAF DSDINKELLT KVPFADHNAM LDETNADISA RVLEAYAAVG ISFNDPSVQR 
ALEFIWNDQE DDHAWYGRWG VNYIYGTWQV LVGLTAIGIS AHDPRLVRAA GWLKSKQQAC 
GGWGETPATY DNPTLRGQGT PTASQTAWAV LGLIAAGEQN SIECQRGVEF LLKTQKHNGT 
WDEEEFTGTG FPRVFYLRYH YYPLYFPLMA LGRFARAGGR VNFAG