Gene Plim_1787 details

Gene Information

• Locus tag: Plim_1787
• ID: 9138488
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 2316695
• End bp: 2318677
• Gene Length: 1983 bp
• Protein Length: 660 aa
• Translation table: 11
• GC content: 54%
• Product: Peptidoglycan-binding LysM
• Protein accession: YP_003629816
• Protein GI: 296122038

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCCGAG AAACCAAAGT CGGACTGGTG CTGGTGGTTG TGCTGGCCTG CGGCTTTGGC 
TTGCTGCTTT ACAAACGGCT GCAACACCCA CAAATCACTG TCGCGCAAGC CACAGAAGGT 
GCCTCAACAG GTCTCACTGC GACAGAAATC AGTGCTGACG ATATCAAAGC TGAGATTCAG 
CTCGCTTCCA GCAACGCAGC ATCTTCGTCA TCCAGTACTG AGAGCAAGCC AGCCACGACA 
CTTCCATCGA GCCTCGAGAA TGAACTGCTC GACCTCAAAA ACGATCCTGT CGCTTCTCCA 
GTGGCTAACT CGAAGTCGCC TGCGAGAAGT CTCCCGAGCT TGCCGACAGA CCTCGACGAT 
ATGGCGTTTC CAGCGGAAAC ACCTCCTGCT GCAGTGGCTG CTTCCACGCC GAAATCGACA 
GCTGTCGATG CTGATCCTTT CTCAGCCCTG GATTTGCCAT CGGATCAGTC TTCCGGATCA 
AATCTACCGG CCAACACGAC AGCACCTCCC GCAATCACAG CAAGTGGAAA CACCTCAAAG 
ACCGTCGAGA TCGACCCCTT CGCAGGCGGT CTTGAAGACT CAAAGCCCAC AAAAACATCA 
CCTGCAGCGA TCGCTTCTTC TCGTGATGCA GAATTGACTT TACCTGCTGG CAATCTTGAG 
CCTCTCCAGA ACAAGCCAGT TTCTTCTGAG AAGATGGCCA CGAGTTCGCC TGCAAATGAA 
GATCCATTTG CCCTCGAATC TCCGGCTGAT GAAATCGAAA AGCCATCCGC ACCCGCTGCA 
AAGACGACCT CTCGTGGTAA CGAACGGTCT TTAGCTCCCT CAAAAAATCA GCCATCGGTG 
CCTCAGGATG ATCCGTTCTC CATGCCTGTC GAGATCCCTG CGAACGATGC CAGTCTTGCT 
GCGGATAGCC AGGCAAACGT CGTCGAATCC CTTGAGCTGC CTGTCCAGGT GGAACCCAAG 
CGATCTGCCA CCAGCTTTCC TGTGAATGAG CCTGCACAGC CAAAAACTCA AGAAACGTCC 
CGGGCTGTAC CAGAACTTGG ATTTGCAGAA CTCGAACAAA CTCCGGCTAA AGCGAAGACT 
CCATCTCCGG CAGTCATCGA CGAATTTGGA TTCGATAATC CCTCTCCTCA AAAAACGCCT 
GCTCAAAAAG AGCCAGCCCA GCCCGCATTG CCGCTCGATC TCGATAGCGA TCCCTTTGGC 
GGAAGTACCA CAATTCCCGC ACCAAAGACG GTTGAGCGAC CTGCATCCAA CACTCCCTCA 
CTGCCAGTGA ACAACTCTCC TGCGAATGAA CTGGATGCTT TCGGTTTTGA AACGCCTGCC 
GCTTCGACCA GTGGTCTGAA ACAACCTGCC CCTGCTGCAT TGCCGATGGC GGACAACAAG 
CCAGTTCAGC AGGAGCCACC GTTTCCGGAT CAGCTTTCGA TACCCGCAAC CAATACTCAG 
AACTCAGTAA ATTTGAGCCT TGAGCCAGGT TCTGCAACCC CTCCCAGCCA ACGCTACACC 
GTCGAACCCA GTGATAACTT CTGGAGTATT TCGCGAAAGG TCTATGGCAG CGGACGCTAC 
TTCAACGCTC TTGCCTCTCA TAATGCCAAG GCGGTTCCTC GTCCCGAAGC TATGAAACCC 
GGAACGACGA TCGAGATTCC TCCGGTGGAA TTTCTTGAGC AGAAATATGG ATTCTCGAAC 
TCTCGCGAAG TCAGCGAAGC CGCTCGTAAC AGTGCTCCAC CAGAAGGAAC GAATGAAGCA 
CCTGCCAGTG GTTTCTTCAT CGACCCGGCA GGTGTTCCTA TGTACAAAGT GAGCGATCAG 
GACACGATGA GTGGCATTGC CAGAGCCCAT CTGGGCCGCT CATCCCGCTG GATCCAGATT 
CTCGAACTCA ACCGAGACAA GCTTCAAGAC GGAAATACCA TTGCCGTCGG CACAATTTTG 
CGACTTCCAC CCGATGCCAG CCAGGTTCAA GTAATGAACA CGTCGCCGGG TACCCGAAAC 
TGA 

 

Protein sequence

MARETKVGLV LVVVLACGFG LLLYKRLQHP QITVAQATEG ASTGLTATEI SADDIKAEIQ 
LASSNAASSS SSTESKPATT LPSSLENELL DLKNDPVASP VANSKSPARS LPSLPTDLDD 
MAFPAETPPA AVAASTPKST AVDADPFSAL DLPSDQSSGS NLPANTTAPP AITASGNTSK 
TVEIDPFAGG LEDSKPTKTS PAAIASSRDA ELTLPAGNLE PLQNKPVSSE KMATSSPANE 
DPFALESPAD EIEKPSAPAA KTTSRGNERS LAPSKNQPSV PQDDPFSMPV EIPANDASLA 
ADSQANVVES LELPVQVEPK RSATSFPVNE PAQPKTQETS RAVPELGFAE LEQTPAKAKT 
PSPAVIDEFG FDNPSPQKTP AQKEPAQPAL PLDLDSDPFG GSTTIPAPKT VERPASNTPS 
LPVNNSPANE LDAFGFETPA ASTSGLKQPA PAALPMADNK PVQQEPPFPD QLSIPATNTQ 
NSVNLSLEPG SATPPSQRYT VEPSDNFWSI SRKVYGSGRY FNALASHNAK AVPRPEAMKP 
GTTIEIPPVE FLEQKYGFSN SREVSEAARN SAPPEGTNEA PASGFFIDPA GVPMYKVSDQ 
DTMSGIARAH LGRSSRWIQI LELNRDKLQD GNTIAVGTIL RLPPDASQVQ VMNTSPGTRN