| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1385 |
|---|
| Symbol | |
|---|
| ID | 9138080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 1767623 |
|---|
| End bp | 1768504 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | Rhomboid family protein |
|---|
| Protein accession | YP_003629418 |
|---|
| Protein GI | 296121640 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.149194 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGAGAGA TTGGTGTTCT CGATGACGTT CAGCAGGCCG ATCTACTGGC AGATTTTCTG
CTGTCAAAAG GCATCAAATG TCATATCGAT AACGACAAAT CTCAGTTCGT GCTGTGGGCG
CTGGATGATG ATCTCGTGGC AAAAGCCAAA GAACATCTGC TGGCCTTCAA AGCCAACCCT
CTCGATCCGG TTTATGCCGA TGGGGCCAAA GCGGCCCGGC AGATTCGCAA AGAGGAACTC
GCCAGGCGAA AGCAATATCG CAAGAACGTC AAAGACATCC GCTCATCATG GAGTCTTGCT
CCCACGACTG GCCCGACATT TGTCTCTGCA CTCTTGCTCT CGATCTGCCT GATAGTGGGA
TATCTGACAT GGTTAGGTCA GGCCGGAAAC ACGATTACGC CCTGGTTGCT CTTCTCGACT
GACATGAACT GGAGCGAATT GAAAGAGGGT GAACTCTGGC GGCTGATTAC TCCCATTTTC
CTGCATTTTG GATTGATGCA TATTCTCTTT AACGCCATGT GGCTGGTCAG TTTGGGCCCC
CTGATCGAAC GACGCAATGG ATCATTTTGG CTGTTGGGGT TTGTGTTGAT CACGGGCATT
GCTTCGAACT TTGCTCAGGC TTATTTCGTC AGCCCGGCAT TTGGCGGCTT CAGCGGAGTG
AATTATGGAC TGATTGGCTA TGCCTGGATC ATGGGACGGA GAGCACCCGG TTCTGGCATC
AGGCTCTCCC CGCAATCGGC AGGGTTAGCC ATTGCCTGGG GACTATTAGG GATTGCCGGT
GAGTTTGTTC ATCATGAATC GTGGATGGCC AACTGGGCAC ATGGTGTAGG CTTTGCAGTC
GGTTGTTTCT GGGCATGGGC TGAAACTGAA AAGAGCAGGT AA
|
|---|
| Protein sequence | MREIGVLDDV QQADLLADFL LSKGIKCHID NDKSQFVLWA LDDDLVAKAK EHLLAFKANP
LDPVYADGAK AARQIRKEEL ARRKQYRKNV KDIRSSWSLA PTTGPTFVSA LLLSICLIVG
YLTWLGQAGN TITPWLLFST DMNWSELKEG ELWRLITPIF LHFGLMHILF NAMWLVSLGP
LIERRNGSFW LLGFVLITGI ASNFAQAYFV SPAFGGFSGV NYGLIGYAWI MGRRAPGSGI
RLSPQSAGLA IAWGLLGIAG EFVHHESWMA NWAHGVGFAV GCFWAWAETE KSR
|
|---|
| |